MYBA1_ORYSJ
ID MYBA1_ORYSJ Reviewed; 237 AA.
AC Q53NK6; Q0IQY5; Q4JL80;
DT 16-MAY-2006, integrated into UniProtKB/Swiss-Prot.
DT 24-MAY-2005, sequence version 1.
DT 03-AUG-2022, entry version 111.
DE RecName: Full=Myb-related protein MYBAS1;
GN Name=MYBAS1; OrderedLocusNames=Os11g0700500, LOC_Os11g47460;
GN ORFNames=OsJ_34832 {ECO:0000312|EMBL:EAZ19289.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS MYBAS1-1 AND MYBAS1-3), AND
RP ALTERNATIVE SPLICING.
RC STRAIN=cv. Nipponbare;
RX PubMed=16531467; DOI=10.1093/jxb/erj094;
RA Li J., Li X., Guo L., Lu F., Feng X., He K., Wei L., Chen Z., Qu L.-J.,
RA Gu H.;
RT "A subgroup of MYB transcription factor genes undergoes highly conserved
RT alternative splicing in Arabidopsis and rice.";
RL J. Exp. Bot. 57:1263-1273(2006).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16188032; DOI=10.1186/1741-7007-3-20;
RG The rice chromosomes 11 and 12 sequencing consortia;
RT "The sequence of rice chromosomes 11 and 12, rich in disease resistance
RT genes and recent gene duplications.";
RL BMC Biol. 3:20-20(2005).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [5]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [7]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS MYBAS1-3).
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
CC -!- FUNCTION: Transcription factor. {ECO:0000305}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00625}.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=2;
CC Name=MYBAS1-3;
CC IsoId=Q53NK6-1; Sequence=Displayed;
CC Name=MYBAS1-1; Synonyms=MYBAS1-2;
CC IsoId=Q53NK6-2; Sequence=VSP_018294;
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DR EMBL; DQ075258; AAY97899.1; -; mRNA.
DR EMBL; DQ075259; AAY97900.1; -; mRNA.
DR EMBL; DQ075260; AAY97901.1; -; mRNA.
DR EMBL; AC134045; AAX95362.1; -; Genomic_DNA.
DR EMBL; DP000010; ABA95393.2; -; Genomic_DNA.
DR EMBL; DP000010; ABA95395.2; -; Genomic_DNA.
DR EMBL; AP008217; BAF28880.1; -; Genomic_DNA.
DR EMBL; AP014967; BAT15361.1; -; Genomic_DNA.
DR EMBL; CM000148; EAZ19289.1; -; Genomic_DNA.
DR EMBL; AK111626; BAG99340.1; -; mRNA.
DR RefSeq; XP_015617959.1; XM_015762473.1. [Q53NK6-1]
DR AlphaFoldDB; Q53NK6; -.
DR SMR; Q53NK6; -.
DR STRING; 4530.OS11T0700500-01; -.
DR PaxDb; Q53NK6; -.
DR PRIDE; Q53NK6; -.
DR EnsemblPlants; Os11t0700500-01; Os11t0700500-01; Os11g0700500. [Q53NK6-1]
DR GeneID; 4351184; -.
DR Gramene; Os11t0700500-01; Os11t0700500-01; Os11g0700500. [Q53NK6-1]
DR KEGG; osa:4351184; -.
DR eggNOG; KOG0048; Eukaryota.
DR HOGENOM; CLU_028567_25_0_1; -.
DR InParanoid; Q53NK6; -.
DR OMA; TMDQIWR; -.
DR OrthoDB; 1499244at2759; -.
DR Proteomes; UP000000763; Chromosome 11.
DR Proteomes; UP000007752; Chromosome 11.
DR Proteomes; UP000059680; Chromosome 11.
DR Genevisible; Q53NK6; OS.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR GO; GO:0043565; F:sequence-specific DNA binding; IBA:GO_Central.
DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IBA:GO_Central.
DR CDD; cd00167; SANT; 2.
DR InterPro; IPR044676; EOBI/EOBII-like_plant.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR017930; Myb_dom.
DR InterPro; IPR001005; SANT/Myb.
DR PANTHER; PTHR45675; PTHR45675; 1.
DR Pfam; PF00249; Myb_DNA-binding; 2.
DR SMART; SM00717; SANT; 2.
DR SUPFAM; SSF46689; SSF46689; 1.
DR PROSITE; PS51294; HTH_MYB; 2.
PE 2: Evidence at transcript level;
KW Alternative splicing; DNA-binding; Nucleus; Reference proteome; Repeat;
KW Transcription; Transcription regulation.
FT CHAIN 1..237
FT /note="Myb-related protein MYBAS1"
FT /id="PRO_0000234363"
FT DOMAIN 5..57
FT /note="HTH myb-type 1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00625"
FT DOMAIN 58..112
FT /note="HTH myb-type 2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00625"
FT DNA_BIND 33..57
FT /note="H-T-H motif"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00625"
FT DNA_BIND 85..108
FT /note="H-T-H motif"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00625"
FT MOTIF 62..65
FT /note="Bipartite nuclear localization signal 1"
FT /evidence="ECO:0000255"
FT MOTIF 109..117
FT /note="Bipartite nuclear localization signal 2"
FT /evidence="ECO:0000255"
FT VAR_SEQ 1..65
FT /note="Missing (in isoform MYBAS1-1)"
FT /evidence="ECO:0000303|PubMed:16531467"
FT /id="VSP_018294"
SQ SEQUENCE 237 AA; 27226 MW; 6527F1EB648C86E2 CRC64;
MVTVREEMRK GPWTEQEDLQ LVCTVRLFGD RRWDFVAKVS GLNRTGKSCR LRWVNYLHPG
LKHGRMSPKE EHLIIELHAR WGNRWSRIAR RLPGRTDNEI KNYWRTHMRK KAQERRGDMS
PSSSSSSLVY QSCLLDTVPI ISMDGGDIHD DRSCMARVLK STQSVMDGYT MDQIWKEIEA
PGAPSLLGID EGKDKACSNL PCPLLTSTMS DYSCPEVFWK IDNEETRMLA TQSGYGK
