MYBA2_ORYSJ
ID MYBA2_ORYSJ Reviewed; 242 AA.
AC Q4JL76; Q0IMI5; Q2QNF6; Q4JL77; Q5NKI2;
DT 16-MAY-2006, integrated into UniProtKB/Swiss-Prot.
DT 02-AUG-2005, sequence version 1.
DT 03-AUG-2022, entry version 108.
DE RecName: Full=Myb-related protein MYBAS2;
GN Name=MYBAS2; Synonyms=MYB17;
GN OrderedLocusNames=Os12g0567300, LOC_Os12g37970;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS MYBAS2-1 AND MYBAS2-3), AND
RP ALTERNATIVE SPLICING.
RC STRAIN=cv. Nipponbare;
RX PubMed=16531467; DOI=10.1093/jxb/erj094;
RA Li J., Li X., Guo L., Lu F., Feng X., He K., Wei L., Chen Z., Qu L.-J.,
RA Gu H.;
RT "A subgroup of MYB transcription factor genes undergoes highly conserved
RT alternative splicing in Arabidopsis and rice.";
RL J. Exp. Bot. 57:1263-1273(2006).
RN [2]
RP NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM MYBAS2-3).
RC STRAIN=cv. Nipponbare;
RA Xu S., Xu Z., Xue H.;
RT "Isolation of myb genes from Oryza sativa.";
RL Submitted (JUL-2002) to the EMBL/GenBank/DDBJ databases.
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16188032; DOI=10.1186/1741-7007-3-20;
RG The rice chromosomes 11 and 12 sequencing consortia;
RT "The sequence of rice chromosomes 11 and 12, rich in disease resistance
RT genes and recent gene duplications.";
RL BMC Biol. 3:20-20(2005).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [5]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [6]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [7]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM MYBAS2-3).
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
CC -!- FUNCTION: Transcription factor. {ECO:0000305}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00625}.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=2;
CC Name=MYBAS2-3;
CC IsoId=Q4JL76-1; Sequence=Displayed;
CC Name=MYBAS2-1; Synonyms=MYBAS2-2;
CC IsoId=Q4JL76-2; Sequence=VSP_018295;
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DR EMBL; DQ075261; AAY97902.1; -; mRNA.
DR EMBL; DQ075262; AAY97903.1; -; mRNA.
DR EMBL; DQ075263; AAY97904.2; -; mRNA.
DR EMBL; AJ495785; CAD44611.1; -; mRNA.
DR EMBL; DP000011; ABA99595.2; -; Genomic_DNA.
DR EMBL; AP008218; BAF30080.2; -; Genomic_DNA.
DR EMBL; AP014968; BAT17706.1; -; Genomic_DNA.
DR EMBL; AK107214; -; NOT_ANNOTATED_CDS; mRNA.
DR RefSeq; XP_015620226.1; XM_015764740.1.
DR RefSeq; XP_015620227.1; XM_015764741.1.
DR RefSeq; XP_015620229.1; XM_015764743.1.
DR AlphaFoldDB; Q4JL76; -.
DR SMR; Q4JL76; -.
DR STRING; 4530.OS12T0567300-00; -.
DR PaxDb; Q4JL76; -.
DR PRIDE; Q4JL76; -.
DR EnsemblPlants; Os12t0567300-00; Os12t0567300-00; Os12g0567300. [Q4JL76-1]
DR Gramene; Os12t0567300-00; Os12t0567300-00; Os12g0567300. [Q4JL76-1]
DR KEGG; osa:4352559; -.
DR eggNOG; KOG0048; Eukaryota.
DR HOGENOM; CLU_028567_25_0_1; -.
DR InParanoid; Q4JL76; -.
DR OMA; NTAFHIK; -.
DR OrthoDB; 1499244at2759; -.
DR Proteomes; UP000000763; Chromosome 12.
DR Proteomes; UP000059680; Chromosome 12.
DR Genevisible; Q4JL76; OS.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR GO; GO:0043565; F:sequence-specific DNA binding; IBA:GO_Central.
DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IBA:GO_Central.
DR CDD; cd00167; SANT; 2.
DR InterPro; IPR044676; EOBI/EOBII-like_plant.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR017930; Myb_dom.
DR InterPro; IPR001005; SANT/Myb.
DR PANTHER; PTHR45675; PTHR45675; 1.
DR Pfam; PF00249; Myb_DNA-binding; 2.
DR SMART; SM00717; SANT; 2.
DR SUPFAM; SSF46689; SSF46689; 1.
DR PROSITE; PS51294; HTH_MYB; 2.
PE 2: Evidence at transcript level;
KW Alternative splicing; DNA-binding; Nucleus; Reference proteome; Repeat;
KW Transcription; Transcription regulation.
FT CHAIN 1..242
FT /note="Myb-related protein MYBAS2"
FT /id="PRO_0000234364"
FT DOMAIN 5..61
FT /note="HTH myb-type 1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00625"
FT DOMAIN 62..112
FT /note="HTH myb-type 2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00625"
FT DNA_BIND 33..57
FT /note="H-T-H motif"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00625"
FT DNA_BIND 85..108
FT /note="H-T-H motif"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00625"
FT REGION 110..133
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT MOTIF 62..65
FT /note="Bipartite nuclear localization signal 1"
FT /evidence="ECO:0000255"
FT MOTIF 109..117
FT /note="Bipartite nuclear localization signal 2"
FT /evidence="ECO:0000255"
FT COMPBIAS 117..133
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT VAR_SEQ 1..65
FT /note="Missing (in isoform MYBAS2-1)"
FT /evidence="ECO:0000303|PubMed:16531467"
FT /id="VSP_018295"
FT CONFLICT 8
FT /note="I -> M (in Ref. 2; CAD44611)"
FT /evidence="ECO:0000305"
FT CONFLICT 194
FT /note="K -> E (in Ref. 7; AK107214)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 242 AA; 27844 MW; D79481A43C7A6818 CRC64;
MVTVREEIRK GPWTEQEDLQ LVCTVRLFGE RRWDFIAKVS GLNRTGKSCR LRWVNYLHPG
LKRGRMSPHE ERLILELHAR WGNRWSRIAR RLPGRTDNEI KNYWRTHMRK KAQERKSNMS
PSSSSSSLTY QSCHPETPSM IIGIEEQELH GGSGCITSIM KSTPVDMDGY PMDQIWMEIE
APNVLPGPCF DEAKDSASNS LSGPLLPYPM WDYYCPETCL RMDDEIKVAP QFGYGKGVGP
CY
