MYBS2_ORYSJ
ID MYBS2_ORYSJ Reviewed; 265 AA.
AC Q7XC51; Q8H1D1; Q9AUS7;
DT 15-MAR-2017, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2003, sequence version 1.
DT 03-AUG-2022, entry version 155.
DE RecName: Full=Transcription factor MYBS2 {ECO:0000303|PubMed:12172034};
DE AltName: Full=Myb-related protein S2 {ECO:0000303|PubMed:12172034};
DE Short=OsMYBS2 {ECO:0000303|PubMed:12172034};
GN Name=MYBS2 {ECO:0000303|PubMed:12172034};
GN OrderedLocusNames=LOC_Os10g41260 {ECO:0000312|EMBL:AAP55023.1},
GN Os10g0562100 {ECO:0000312|EMBL:BAF27229.1};
GN ORFNames=OsJ_32468 {ECO:0000312|EMBL:EAZ16983.1},
GN OSJNBb0089A17.5 {ECO:0000312|EMBL:AAK31272.1},
GN OSNPB_100562100 {ECO:0000312|EMBL:BAT12069.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12791992; DOI=10.1126/science.1083523;
RA Yu Y., Rambo T., Currie J., Saski C., Kim H.-R., Collura K., Thompson S.,
RA Simmons J., Yang T.-J., Nah G., Patel A.J., Thurmond S., Henry D.,
RA Oates R., Palmer M., Pries G., Gibson J., Anderson H., Paradkar M.,
RA Crane L., Dale J., Carver M.B., Wood T., Frisch D., Engler F.,
RA Soderlund C., Palmer L.E., Teytelman L., Nascimento L., De la Bastide M.,
RA Spiegel L., Ware D., O'Shaughnessy A., Dike S., Dedhia N., Preston R.,
RA Huang E., Ferraro K., Kuit K., Miller B., Zutavern T., Katzenberger F.,
RA Muller S., Balija V., Martienssen R.A., Stein L., Minx P., Johnson D.,
RA Cordum H., Mardis E., Cheng Z., Jiang J., Wilson R., McCombie W.R.,
RA Wing R.A., Yuan Q., Ouyang S., Liu J., Jones K.M., Gansberger K.,
RA Moffat K., Hill J., Tsitrin T., Overton L., Bera J., Kim M., Jin S.,
RA Tallon L., Ciecko A., Pai G., Van Aken S., Utterback T., Reidmuller S.,
RA Bormann J., Feldblyum T., Hsiao J., Zismann V., Blunt S., de Vazeille A.R.,
RA Shaffer T., Koo H., Suh B., Yang Q., Haas B., Peterson J., Pertea M.,
RA Volfovsky N., Wortman J., White O., Salzberg S.L., Fraser C.M., Buell C.R.,
RA Messing J., Song R., Fuks G., Llaca V., Kovchak S., Young S., Bowers J.E.,
RA Paterson A.H., Johns M.A., Mao L., Pan H., Dean R.A.;
RT "In-depth view of structure, activity, and evolution of rice chromosome
RT 10.";
RL Science 300:1566-1569(2003).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [6]
RP NUCLEOTIDE SEQUENCE [MRNA] OF 33-265, FUNCTION, TISSUE SPECIFICITY, AND
RP INDUCTION BY SUCROSE AND GIBBERELLIC ACID.
RX PubMed=12172034; DOI=10.1105/tpc.001735;
RA Lu C.-A., Ho T.-H., Ho S.-L., Yu S.-M.;
RT "Three novel MYB proteins with one DNA binding repeat mediate sugar and
RT hormone regulation of alpha-amylase gene expression.";
RL Plant Cell 14:1963-1980(2002).
CC -!- FUNCTION: Transcription activator that binds to 5'-TATCCA-3' elements
CC in gene promoters. Derepresses weakly the sugar-repressed transcription
CC of promoters containing SRS. Contributes to the sugar-repressed
CC transcription of promoters containing 5'-TATCCA-3' elements.
CC {ECO:0000269|PubMed:12172034}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00768}.
CC -!- TISSUE SPECIFICITY: Expressed mainly in roots, leaves, and senescent
CC leaves at similar levels. {ECO:0000269|PubMed:12172034}.
CC -!- INDUCTION: Induced by sucrose. Slightly repressed by gibberellic acid
CC (GA). {ECO:0000269|PubMed:12172034}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAN63153.1; Type=Frameshift; Evidence={ECO:0000305};
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DR EMBL; AC079890; AAK31272.1; -; Genomic_DNA.
DR EMBL; DP000086; AAP55023.1; -; Genomic_DNA.
DR EMBL; AP008216; BAF27229.1; -; Genomic_DNA.
DR EMBL; AP014966; BAT12069.1; -; Genomic_DNA.
DR EMBL; CM000147; EAZ16983.1; -; Genomic_DNA.
DR EMBL; AY151043; AAN63153.1; ALT_FRAME; mRNA.
DR RefSeq; XP_015612867.1; XM_015757381.1.
DR AlphaFoldDB; Q7XC51; -.
DR SMR; Q7XC51; -.
DR STRING; 4530.OS10T0562100-01; -.
DR PaxDb; Q7XC51; -.
DR PRIDE; Q7XC51; -.
DR EnsemblPlants; Os10t0562100-01; Os10t0562100-01; Os10g0562100.
DR GeneID; 4349391; -.
DR Gramene; Os10t0562100-01; Os10t0562100-01; Os10g0562100.
DR KEGG; osa:4349391; -.
DR eggNOG; ENOG502RYHB; Eukaryota.
DR HOGENOM; CLU_038424_5_1_1; -.
DR InParanoid; Q7XC51; -.
DR OMA; PVMFRLF; -.
DR OrthoDB; 1328901at2759; -.
DR Proteomes; UP000000763; Chromosome 10.
DR Proteomes; UP000007752; Chromosome 10.
DR Proteomes; UP000059680; Chromosome 10.
DR ExpressionAtlas; Q7XC51; baseline and differential.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IDA:UniProtKB.
DR GO; GO:0045893; P:positive regulation of transcription, DNA-templated; IDA:UniProtKB.
DR GO; GO:0009739; P:response to gibberellin; IEP:UniProtKB.
DR GO; GO:0009744; P:response to sucrose; IEP:UniProtKB.
DR CDD; cd00167; SANT; 1.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR017930; Myb_dom.
DR InterPro; IPR006447; Myb_dom_plants.
DR InterPro; IPR001005; SANT/Myb.
DR InterPro; IPR017884; SANT_dom.
DR Pfam; PF00249; Myb_DNA-binding; 1.
DR SMART; SM00717; SANT; 1.
DR SUPFAM; SSF46689; SSF46689; 1.
DR TIGRFAMs; TIGR01557; myb_SHAQKYF; 1.
DR PROSITE; PS51294; HTH_MYB; 1.
PE 2: Evidence at transcript level;
KW Activator; DNA-binding; Nucleus; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..265
FT /note="Transcription factor MYBS2"
FT /id="PRO_0000439175"
FT DOMAIN 93..149
FT /note="HTH myb-type"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00625"
FT DNA_BIND 121..145
FT /note="H-T-H motif"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00625"
FT REGION 29..101
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT MOTIF 71..78
FT /note="Nuclear localization signal"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00768"
FT COMPBIAS 70..87
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 265 AA; 29271 MW; 74B3F6D6B0DE2BEE CRC64;
MEQHEEAAER KPSPPVIFRL FGVEVRGGGG GVDEEEYEEE EVEGGLFIKK SSSMPNLTSI
DPLPVPADGG KRRASDDSEL ASGQQKRRRR KVQERKKGVP WTEEEHKKFL EGLRQLGKGD
WRGISKNFVT SRTATQVASH AQKYFLRQTN PGKKKRRASL FDVVAECSDD QLPSPQSVGT
KPPTQDIIHT DRGDVPILSY PVARGFRGDS VQVDELTEYV KRLKAAEDMS LSMISGLEMA
SSSISSLELS IAPPHCAIEA AIKVL
