MYBS3_ORYSJ
ID MYBS3_ORYSJ Reviewed; 318 AA.
AC Q7XC57; Q108Y2; Q8H1D0; Q9AUT3;
DT 15-MAR-2017, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2003, sequence version 1.
DT 03-AUG-2022, entry version 151.
DE RecName: Full=Transcription factor MYBS3 {ECO:0000303|PubMed:12172034};
DE AltName: Full=Myb-related protein S3 {ECO:0000303|PubMed:12172034};
DE Short=OsMYBS3 {ECO:0000303|PubMed:12172034};
GN Name=MYBS3 {ECO:0000303|PubMed:12172034};
GN OrderedLocusNames=LOC_Os10g41200 {ECO:0000312|EMBL:AAP55017.1},
GN Os10g0561400 {ECO:0000312|EMBL:BAT12060.1};
GN ORFNames=OsJ_32461 {ECO:0000312|EMBL:EAZ16977.1},
GN OSJNBb0089A17.8 {ECO:0000312|EMBL:AAK31280.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), FUNCTION, TISSUE SPECIFICITY, AND
RP INDUCTION BY SUCROSE AND GIBBERELLIC ACID.
RX PubMed=12172034; DOI=10.1105/tpc.001735;
RA Lu C.-A., Ho T.-H., Ho S.-L., Yu S.-M.;
RT "Three novel MYB proteins with one DNA binding repeat mediate sugar and
RT hormone regulation of alpha-amylase gene expression.";
RL Plant Cell 14:1963-1980(2002).
RN [2]
RP NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1).
RC STRAIN=cv. Ilpoombyeo; TISSUE=Seed;
RA Yoon U.H., Lee G.S., Lee J.S., Hahn J.H., Kim C.K., Yang H.W., Choi E.Y.,
RA Lee J.H., Suh S.C., Kim Y.H.;
RL Submitted (JUN-2008) to the EMBL/GenBank/DDBJ databases.
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12791992; DOI=10.1126/science.1083523;
RA Yu Y., Rambo T., Currie J., Saski C., Kim H.-R., Collura K., Thompson S.,
RA Simmons J., Yang T.-J., Nah G., Patel A.J., Thurmond S., Henry D.,
RA Oates R., Palmer M., Pries G., Gibson J., Anderson H., Paradkar M.,
RA Crane L., Dale J., Carver M.B., Wood T., Frisch D., Engler F.,
RA Soderlund C., Palmer L.E., Teytelman L., Nascimento L., De la Bastide M.,
RA Spiegel L., Ware D., O'Shaughnessy A., Dike S., Dedhia N., Preston R.,
RA Huang E., Ferraro K., Kuit K., Miller B., Zutavern T., Katzenberger F.,
RA Muller S., Balija V., Martienssen R.A., Stein L., Minx P., Johnson D.,
RA Cordum H., Mardis E., Cheng Z., Jiang J., Wilson R., McCombie W.R.,
RA Wing R.A., Yuan Q., Ouyang S., Liu J., Jones K.M., Gansberger K.,
RA Moffat K., Hill J., Tsitrin T., Overton L., Bera J., Kim M., Jin S.,
RA Tallon L., Ciecko A., Pai G., Van Aken S., Utterback T., Reidmuller S.,
RA Bormann J., Feldblyum T., Hsiao J., Zismann V., Blunt S., de Vazeille A.R.,
RA Shaffer T., Koo H., Suh B., Yang Q., Haas B., Peterson J., Pertea M.,
RA Volfovsky N., Wortman J., White O., Salzberg S.L., Fraser C.M., Buell C.R.,
RA Messing J., Song R., Fuks G., Llaca V., Kovchak S., Young S., Bowers J.E.,
RA Paterson A.H., Johns M.A., Mao L., Pan H., Dean R.A.;
RT "In-depth view of structure, activity, and evolution of rice chromosome
RT 10.";
RL Science 300:1566-1569(2003).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [5]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [7]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 2).
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [8]
RP FUNCTION, SUBCELLULAR LOCATION, AND INDUCTION.
RX PubMed=20130099; DOI=10.1104/pp.110.153015;
RA Su C.F., Wang Y.C., Hsieh T.H., Lu C.A., Tseng T.H., Yu S.M.;
RT "A novel MYBS3-dependent pathway confers cold tolerance in rice.";
RL Plant Physiol. 153:145-158(2010).
CC -!- FUNCTION: Transcription repressor that binds to 5'-TATCCA-3' elements
CC in gene promoters. Contributes to the sugar-repressed transcription of
CC promoters containing SRS or 5'-TATCCA-3' elements. Transcription
CC repressor involved in a cold stress response pathway that confers cold
CC tolerance. Suppresses the DREB1-dependent signaling pathway under
CC prolonged cold stress. DREB1 responds quickly and transiently while
CC MYBS3 responds slowly to cold stress. They may act sequentially and
CC complementarily for adaptation to short- and long-term cold stress
CC (PubMed:20130099). {ECO:0000269|PubMed:12172034,
CC ECO:0000269|PubMed:20130099}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00625,
CC ECO:0000269|PubMed:20130099}.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=2;
CC Name=1;
CC IsoId=Q7XC57-1; Sequence=Displayed;
CC Name=2;
CC IsoId=Q7XC57-2; Sequence=VSP_058801;
CC -!- TISSUE SPECIFICITY: Expressed in all tissues, with the highest level in
CC senescent leaves. {ECO:0000269|PubMed:12172034}.
CC -!- INDUCTION: Repressed by sucrose and gibberellic acid (GA)
CC (PubMed:12172034). Induced by cold stress in roots and shoots. Induced
CC by salt stress in shoots. Down-regulated by abscisic aci (ABA) in
CC shoots (PubMed:20130099). {ECO:0000269|PubMed:12172034,
CC ECO:0000269|PubMed:20130099}.
CC -!- MISCELLANEOUS: Plants over-expressing MYBS3 show increased tolerance to
CC cold stress. {ECO:0000269|PubMed:20130099}.
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DR EMBL; AY151044; AAN63154.1; -; mRNA.
DR EMBL; EU837254; ACF60472.1; -; mRNA.
DR EMBL; AC079890; AAK31280.1; -; Genomic_DNA.
DR EMBL; DP000086; AAP55017.1; -; Genomic_DNA.
DR EMBL; DP000086; ABG66261.1; -; Genomic_DNA.
DR EMBL; AP014966; BAT12060.1; -; Genomic_DNA.
DR EMBL; AP014966; BAT12061.1; -; Genomic_DNA.
DR EMBL; CM000147; EAZ16977.1; -; Genomic_DNA.
DR EMBL; AK059716; BAG87083.1; -; mRNA.
DR EMBL; AK101062; BAG94895.1; -; mRNA.
DR RefSeq; XP_015614288.1; XM_015758802.1. [Q7XC57-1]
DR AlphaFoldDB; Q7XC57; -.
DR STRING; 4530.OS10T0561400-02; -.
DR PaxDb; Q7XC57; -.
DR PRIDE; Q7XC57; -.
DR EnsemblPlants; Os10t0561400-02; Os10t0561400-02; Os10g0561400. [Q7XC57-1]
DR EnsemblPlants; Os10t0561400-03; Os10t0561400-03; Os10g0561400. [Q7XC57-2]
DR GeneID; 4349385; -.
DR Gramene; Os10t0561400-02; Os10t0561400-02; Os10g0561400. [Q7XC57-1]
DR Gramene; Os10t0561400-03; Os10t0561400-03; Os10g0561400. [Q7XC57-2]
DR KEGG; osa:4349385; -.
DR eggNOG; ENOG502QUPG; Eukaryota.
DR HOGENOM; CLU_038424_0_0_1; -.
DR InParanoid; Q7XC57; -.
DR OMA; WPGYSTE; -.
DR OrthoDB; 1071185at2759; -.
DR Proteomes; UP000000763; Chromosome 10.
DR Proteomes; UP000007752; Chromosome 10.
DR Proteomes; UP000059680; Chromosome 10.
DR ExpressionAtlas; Q7XC57; baseline and differential.
DR GO; GO:0005634; C:nucleus; IDA:UniProtKB.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IDA:UniProtKB.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0045892; P:negative regulation of transcription, DNA-templated; IDA:UniProtKB.
DR GO; GO:0009733; P:response to auxin; IBA:GO_Central.
DR GO; GO:0009723; P:response to ethylene; IBA:GO_Central.
DR GO; GO:0009739; P:response to gibberellin; IEP:UniProtKB.
DR GO; GO:0009744; P:response to sucrose; IEP:UniProtKB.
DR CDD; cd00167; SANT; 1.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR017930; Myb_dom.
DR InterPro; IPR006447; Myb_dom_plants.
DR InterPro; IPR001005; SANT/Myb.
DR InterPro; IPR017884; SANT_dom.
DR Pfam; PF00249; Myb_DNA-binding; 1.
DR SMART; SM00717; SANT; 1.
DR SUPFAM; SSF46689; SSF46689; 1.
DR TIGRFAMs; TIGR01557; myb_SHAQKYF; 1.
DR PROSITE; PS51294; HTH_MYB; 1.
PE 2: Evidence at transcript level;
KW Alternative splicing; DNA-binding; Metal-binding; Nucleus;
KW Reference proteome; Repressor; Stress response; Transcription;
KW Transcription regulation; Zinc; Zinc-finger.
FT CHAIN 1..318
FT /note="Transcription factor MYBS3"
FT /id="PRO_0000439177"
FT DOMAIN 88..144
FT /note="HTH myb-type"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00625"
FT ZN_FING 3..20
FT /note="CCHC-type"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00047"
FT DNA_BIND 116..140
FT /note="H-T-H motif"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00625"
FT REGION 1..20
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 50..98
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 159..200
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT VAR_SEQ 1..92
FT /note="MTRRCSHCSHNGHNSRTCPNRGVKIFGVRLTDGSIRKSASMGNLSLLSSAAG
FT STSGGASPADGPDAAPTAADGYASDDFVQGSSSATRDRKK -> MFLIKMTLT (in
FT isoform 2)"
FT /id="VSP_058801"
FT CONFLICT 83
FT /note="S -> F (in Ref. 1; AAN63154)"
FT /evidence="ECO:0000305"
FT CONFLICT 189
FT /note="R -> K (in Ref. 1; AAN63154)"
FT /evidence="ECO:0000305"
FT CONFLICT 290
FT /note="V -> E (in Ref. 1; AAN63154)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 318 AA; 34489 MW; 532B34A9F5EAB45E CRC64;
MTRRCSHCSH NGHNSRTCPN RGVKIFGVRL TDGSIRKSAS MGNLSLLSSA AGSTSGGASP
ADGPDAAPTA ADGYASDDFV QGSSSATRDR KKGVPWTEEE HRRFLLGLQK LGKGDWRGIS
RNFVVSRTPT QVASHAQKYF IRQSNMTRRK RRSSLFDMVP DESMDLPPLP GGQEPETQVL
NQPALPPPRE EEEVDSMESD TSAVAESSSA SAIMPDNLQS TYPVIVPAYF SPFLQFSVPF
WQNQKDEDGP VQETHEIVKP VPVHSKSPIN VDELVGMSKL SIGESNQETV STSLSLNLVG
GQNRQSAFHA NPPTRAQA
