NAC10_ARATH
ID NAC10_ARATH Reviewed; 314 AA.
AC F4HY61; Q8GXL6; Q8LCP5; Q9SGP5;
DT 01-APR-2015, integrated into UniProtKB/Swiss-Prot.
DT 28-JUN-2011, sequence version 1.
DT 03-AUG-2022, entry version 71.
DE RecName: Full=NAC domain-containing protein 10 {ECO:0000303|PubMed:15029955};
DE Short=ANAC010 {ECO:0000303|PubMed:15029955};
DE AltName: Full=Protein SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 3 {ECO:0000303|PubMed:18952777};
GN Name=NAC010 {ECO:0000312|EMBL:AEE30980.1};
GN Synonyms=SND3 {ECO:0000303|PubMed:18952777};
GN OrderedLocusNames=At1g28470 {ECO:0000312|Araport:AT1G28470};
GN ORFNames=F3M18.9 {ECO:0000312|EMBL:AAF16767.1};
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 148-314.
RC STRAIN=cv. Columbia;
RX PubMed=11910074; DOI=10.1126/science.1071006;
RA Seki M., Narusaka M., Kamiya A., Ishida J., Satou M., Sakurai T.,
RA Nakajima M., Enju A., Akiyama K., Oono Y., Muramatsu M., Hayashizaki Y.,
RA Kawai J., Carninci P., Itoh M., Ishii Y., Arakawa T., Shibata K.,
RA Shinagawa A., Shinozaki K.;
RT "Functional annotation of a full-length Arabidopsis cDNA collection.";
RL Science 296:141-145(2002).
RN [5]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=15029955; DOI=10.1093/dnares/10.6.239;
RA Ooka H., Satoh K., Doi K., Nagata T., Otomo Y., Murakami K., Matsubara K.,
RA Osato N., Kawai J., Carninci P., Hayashizaki Y., Suzuki K., Kojima K.,
RA Takahara Y., Yamamoto K., Kikuchi S.;
RT "Comprehensive analysis of NAC family genes in Oryza sativa and Arabidopsis
RT thaliana.";
RL DNA Res. 10:239-247(2003).
RN [6]
RP FUNCTION, SUBCELLULAR LOCATION, AND TISSUE SPECIFICITY.
RX PubMed=18952777; DOI=10.1105/tpc.108.061325;
RA Zhong R., Lee C., Zhou J., McCarthy R.L., Ye Z.H.;
RT "A battery of transcription factors involved in the regulation of secondary
RT cell wall biosynthesis in Arabidopsis.";
RL Plant Cell 20:2763-2782(2008).
CC -!- FUNCTION: Transcriptional activator that plays a regulatory role in the
CC development of secondary cell wall fibers. Is a direct target of SND1.
CC {ECO:0000269|PubMed:18952777}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00353,
CC ECO:0000269|PubMed:18952777}.
CC -!- TISSUE SPECIFICITY: Expressed in protoxylem and elongating
CC interfascicular fiber cells of elongating internodes, developing
CC metaxylem cells and interfascicular fibers of non-elongating internodes
CC and developing secondary xylem of roots. {ECO:0000269|PubMed:18952777}.
CC -!- DOMAIN: The NAC domain includes a DNA binding domain and a dimerization
CC domain. {ECO:0000255|PROSITE-ProRule:PRU00353}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAF16767.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=BAC42793.1; Type=Erroneous initiation; Note=Truncated N-terminus.; Evidence={ECO:0000305};
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DR EMBL; AC010155; AAF16767.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002684; AEE30980.1; -; Genomic_DNA.
DR EMBL; AY086476; AAM63478.1; -; mRNA.
DR EMBL; AK118170; BAC42793.1; ALT_INIT; mRNA.
DR RefSeq; NP_564309.1; NM_102615.3.
DR AlphaFoldDB; F4HY61; -.
DR SMR; F4HY61; -.
DR IntAct; F4HY61; 2.
DR STRING; 3702.AT1G28470.1; -.
DR PaxDb; F4HY61; -.
DR PRIDE; F4HY61; -.
DR ProteomicsDB; 251194; -.
DR DNASU; 839747; -.
DR EnsemblPlants; AT1G28470.1; AT1G28470.1; AT1G28470.
DR GeneID; 839747; -.
DR Gramene; AT1G28470.1; AT1G28470.1; AT1G28470.
DR KEGG; ath:AT1G28470; -.
DR Araport; AT1G28470; -.
DR TAIR; locus:2032580; AT1G28470.
DR eggNOG; ENOG502QR2Y; Eukaryota.
DR HOGENOM; CLU_025101_1_0_1; -.
DR InParanoid; F4HY61; -.
DR OMA; FGYEHGG; -.
DR OrthoDB; 1023978at2759; -.
DR PRO; PR:F4HY61; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; F4HY61; baseline and differential.
DR Genevisible; F4HY61; AT.
DR GO; GO:0005634; C:nucleus; IDA:TAIR.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; ISS:TAIR.
DR GO; GO:0000976; F:transcription cis-regulatory region binding; IPI:TAIR.
DR GO; GO:0045893; P:positive regulation of transcription, DNA-templated; IDA:TAIR.
DR GO; GO:2000652; P:regulation of secondary cell wall biogenesis; IMP:TAIR.
DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IBA:GO_Central.
DR Gene3D; 2.170.150.80; -; 1.
DR InterPro; IPR003441; NAC-dom.
DR InterPro; IPR036093; NAC_dom_sf.
DR InterPro; IPR044799; SOG1-like.
DR PANTHER; PTHR31079; PTHR31079; 1.
DR Pfam; PF02365; NAM; 1.
DR SUPFAM; SSF101941; SSF101941; 1.
DR PROSITE; PS51005; NAC; 1.
PE 2: Evidence at transcript level;
KW Activator; DNA-binding; Nucleus; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..314
FT /note="NAC domain-containing protein 10"
FT /id="PRO_0000432421"
FT DOMAIN 77..236
FT /note="NAC"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00353"
FT DNA_BIND 187..242
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00353"
FT REGION 18..48
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 150..182
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 156..175
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CONFLICT 52
FT /note="T -> S (in Ref. 3; AAM63478)"
FT /evidence="ECO:0000305"
FT CONFLICT 259
FT /note="S -> R (in Ref. 3; AAM63478)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 314 AA; 35499 MW; 320C8BEDD83CAE90 CRC64;
MSWCDGSDDN YDLNLERVSN TDHPSVQLKD QSQSCVTSRP DSKISAETPI TTCPSCGHKL
HHHQDDQVGS IKDLPSLPAG VKFDPSDKEI LMHLEAKVSS DKRKLHPLID EFIPTLEGEN
GICYTHPEKL PGVSKDGQVR HFFHRPSKAY TTGTRKRRKV STDEEGHETR WHKTGKTRPV
LSQSGETGFK KILVLYTNYG RQKKPEKTNW VMHQYHLGSS EDEKDGEPVL SKVFYQTQPR
QCGSMEPKPK NLVNLNRFSY ENIQAGFGYE HGGKSEETTQ VIRELVVREG DGSCSFLSFT
CDASKGKESF MKNQ
