NAC23_ORYSJ
ID NAC23_ORYSJ Reviewed; 252 AA.
AC Q6H8A9; Q0E2U2;
DT 02-JUN-2021, integrated into UniProtKB/Swiss-Prot.
DT 19-JUL-2004, sequence version 1.
DT 03-AUG-2022, entry version 120.
DE RecName: Full=NAC domain-containing protein 23 {ECO:0000303|PubMed:15029955};
DE Short=ONAC023 {ECO:0000303|PubMed:15029955};
DE AltName: Full=OsNAC6 {ECO:0000312|EMBL:ABL74566.1};
DE AltName: Full=Protein THERMOSENSITIVE MALE STERILITY 5 {ECO:0000303|PubMed:16896793};
GN Name=NAC23 {ECO:0000303|PubMed:15029955};
GN Synonyms=NAC6 {ECO:0000312|EMBL:ABL74566.1},
GN TMS5 {ECO:0000303|PubMed:16896793};
GN OrderedLocusNames=Os02g0214500 {ECO:0000312|EMBL:BAS77622.1},
GN LOC_Os02g12310 {ECO:0000305};
GN ORFNames=OJ1006_D05.18 {ECO:0000312|EMBL:BAD25040.1},
GN OsJ_05880 {ECO:0000312|EMBL:EAZ22224.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA].
RA Yoon U.H., Kim Y.H.;
RT "Molecular cloning of OsNAC6 genes in rice seeds.";
RL Submitted (NOV-2006) to the EMBL/GenBank/DDBJ databases.
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [7]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=15029955; DOI=10.1093/dnares/10.6.239;
RA Ooka H., Satoh K., Doi K., Nagata T., Otomo Y., Murakami K., Matsubara K.,
RA Osato N., Kawai J., Carninci P., Hayashizaki Y., Suzuki K., Kojima K.,
RA Takahara Y., Yamamoto K., Kikuchi S.;
RT "Comprehensive analysis of NAC family genes in Oryza sativa and Arabidopsis
RT thaliana.";
RL DNA Res. 10:239-247(2003).
RN [8]
RP TISSUE SPECIFICITY.
RX PubMed=16896793; DOI=10.1007/s00425-006-0353-6;
RA Yang Q., Liang C., Zhuang W., Li J., Deng H., Deng Q., Wang B.;
RT "Characterization and identification of the candidate gene of rice thermo-
RT sensitive genic male sterile gene tms5 by mapping.";
RL Planta 225:321-330(2007).
RN [9]
RP TISSUE SPECIFICITY.
RX PubMed=18813954; DOI=10.1007/s00438-008-0386-6;
RA Fang Y., You J., Xie K., Xie W., Xiong L.;
RT "Systematic sequence analysis and identification of tissue-specific or
RT stress-responsive genes of NAC transcription factor family in rice.";
RL Mol. Genet. Genomics 280:547-563(2008).
RN [10]
RP INTERACTION WITH NAC26, AND SUBCELLULAR LOCATION.
RX PubMed=27872632; DOI=10.3389/fpls.2016.01638;
RA Mathew I.E., Das S., Mahto A., Agarwal P.;
RT "Three rice NAC transcription factors heteromerize and are associated with
RT seed size.";
RL Front. Plant Sci. 7:1638-1638(2016).
CC -!- FUNCTION: Transcription factor involved in the regulation of seed size
CC (By similarity). Binds to DNA-specific sequences of CLPD1 and OAT
CC promoters in vitro (PubMed:18813954). {ECO:0000250|UniProtKB:B8AE67,
CC ECO:0000269|PubMed:18813954}.
CC -!- SUBUNIT: Forms heterodimers with NAC26. {ECO:0000269|PubMed:27872632}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00353}.
CC Cytoplasm {ECO:0000269|PubMed:27872632}.
CC -!- TISSUE SPECIFICITY: Expressed in stems and panicles (PubMed:16896793).
CC Expressed in developing endosperm (PubMed:18813954).
CC {ECO:0000269|PubMed:16896793, ECO:0000269|PubMed:18813954}.
CC -!- DOMAIN: The NAC domain includes a DNA binding domain and a dimerization
CC domain. {ECO:0000255|PROSITE-ProRule:PRU00353}.
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DR EMBL; EF122479; ABL74566.1; -; mRNA.
DR EMBL; AP004039; BAD25040.1; -; Genomic_DNA.
DR EMBL; AP008208; BAF08196.1; -; Genomic_DNA.
DR EMBL; AP014958; BAS77622.1; -; Genomic_DNA.
DR EMBL; CM000139; EAZ22224.1; -; Genomic_DNA.
DR EMBL; AK107283; BAG98022.1; -; mRNA.
DR RefSeq; XP_015625739.1; XM_015770253.1.
DR AlphaFoldDB; Q6H8A9; -.
DR SMR; Q6H8A9; -.
DR STRING; 4530.OS02T0214500-01; -.
DR PaxDb; Q6H8A9; -.
DR PRIDE; Q6H8A9; -.
DR EnsemblPlants; Os02t0214500-01; Os02t0214500-01; Os02g0214500.
DR GeneID; 4328715; -.
DR Gramene; Os02t0214500-01; Os02t0214500-01; Os02g0214500.
DR KEGG; osa:4328715; -.
DR eggNOG; ENOG502QSIY; Eukaryota.
DR HOGENOM; CLU_035664_10_0_1; -.
DR OMA; HNGLLQF; -.
DR OrthoDB; 697995at2759; -.
DR Proteomes; UP000000763; Chromosome 2.
DR Proteomes; UP000007752; Chromosome 2.
DR Proteomes; UP000059680; Chromosome 2.
DR GO; GO:0005737; C:cytoplasm; IDA:UniProtKB.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0043565; F:sequence-specific DNA binding; IDA:UniProtKB.
DR GO; GO:0080050; P:regulation of seed development; ISS:UniProtKB.
DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:InterPro.
DR Gene3D; 2.170.150.80; -; 1.
DR InterPro; IPR003441; NAC-dom.
DR InterPro; IPR036093; NAC_dom_sf.
DR Pfam; PF02365; NAM; 1.
DR SUPFAM; SSF101941; SSF101941; 1.
DR PROSITE; PS51005; NAC; 1.
PE 1: Evidence at protein level;
KW Cytoplasm; DNA-binding; Nucleus; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..252
FT /note="NAC domain-containing protein 23"
FT /id="PRO_0000452672"
FT DOMAIN 12..177
FT /note="NAC"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00353"
FT DNA_BIND 110..183
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00353"
FT REGION 225..252
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 252 AA; 28163 MW; CDC8D229B5AC15A7 CRC64;
MAMTPQLAFS RMPPGFRFQP TDEQLVVDYL QRRTAAQPCV TPDITDIDVY NVDPWQLPAM
AMYGSDHDRY FFTMAAREAQ ARRTTPSGFW KPTGTKKTIF VVAGGHEVPT AVKRRFVFYL
GHHQPSGSNN NNKTSWIMHE YRLMNSPRAA VPSSSSVNRL PTDDLTEEMV LCRISNKDLP
KPPFIHNSLL QFSSVGLNGD GYNYLILDHL EPPAMEYPNV GIGNVDDAAA GTDDPGDLDE
EIDDSMQRNH GG
