NAC47_ARATH
ID NAC47_ARATH Reviewed; 359 AA.
AC Q84TD6;
DT 02-NOV-2016, integrated into UniProtKB/Swiss-Prot.
DT 01-JUN-2003, sequence version 1.
DT 03-AUG-2022, entry version 129.
DE RecName: Full=NAC transcription factor 47 {ECO:0000305};
DE AltName: Full=NAC domain-containing protein 47 {ECO:0000305};
DE Short=ANAC047 {ECO:0000305};
DE AltName: Full=Protein SPEEDY HYPONASTIC GROWTH {ECO:0000303|PubMed:24363315};
GN Name=NAC047 {ECO:0000305};
GN Synonyms=NAC47 {ECO:0000305}, SHYG {ECO:0000303|PubMed:24363315};
GN OrderedLocusNames=At3g04070 {ECO:0000312|Araport:AT3G04070};
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130713; DOI=10.1038/35048706;
RA Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B.,
RA Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M.,
RA Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V.,
RA Choisne N., Artiguenave F., Robert C., Brottier P., Wincker P.,
RA Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H.,
RA Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H.,
RA Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A.,
RA Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H.,
RA Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J.,
RA Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B.,
RA Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D.,
RA de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E.,
RA Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G.,
RA Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X.,
RA Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M.,
RA Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B.,
RA Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J.,
RA Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C.,
RA Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y.,
RA Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K.,
RA Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A.,
RA Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T.,
RA Watanabe A., Yamada M., Yasuda M., Tabata S.;
RT "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.";
RL Nature 408:820-822(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP FUNCTION.
RX PubMed=18849494; DOI=10.1105/tpc.108.060160;
RA Kunieda T., Mitsuda N., Ohme-Takagi M., Takeda S., Aida M., Tasaka M.,
RA Kondo M., Nishimura M., Hara-Nishimura I.;
RT "NAC family proteins NARS1/NAC2 and NARS2/NAM in the outer integument
RT regulate embryogenesis in Arabidopsis.";
RL Plant Cell 20:2631-2642(2008).
RN [6]
RP FUNCTION, SUBCELLULAR LOCATION, AND INDUCTION BY ROOT FLOODING.
RX PubMed=24363315; DOI=10.1105/tpc.113.117861;
RA Rauf M., Arif M., Fisahn J., Xue G.P., Balazadeh S., Mueller-Roeber B.;
RT "NAC transcription factor speedy hyponastic growth regulates flooding-
RT induced leaf movement in Arabidopsis.";
RL Plant Cell 25:4941-4955(2013).
RN [7]
RP INDUCTION BY SENESCENCE.
RX PubMed=24659488; DOI=10.1093/jxb/eru112;
RA Kim H.J., Hong S.H., Kim Y.W., Lee I.H., Jun J.H., Phee B.K., Rupak T.,
RA Jeong H., Lee Y., Hong B.S., Nam H.G., Woo H.R., Lim P.O.;
RT "Gene regulatory cascade of senescence-associated NAC transcription factors
RT activated by ETHYLENE-INSENSITIVE2-mediated leaf senescence signalling in
RT Arabidopsis.";
RL J. Exp. Bot. 65:4023-4036(2014).
CC -!- FUNCTION: Transcription factor that binds to the promoter of ACO5, an
CC ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-
CC induced hyponastic leaf movement, and cell expansion in abaxial cells
CC of the basal petiole region, by directly regulating the expression of
CC ACO5 (PubMed:24363315). Required for normal seed development and
CC morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494,
CC ECO:0000269|PubMed:24363315}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00353,
CC ECO:0000269|PubMed:24363315}.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=1;
CC Comment=A number of isoforms are produced. According to EST
CC sequences. {ECO:0000305};
CC Name=1;
CC IsoId=Q84TD6-1; Sequence=Displayed;
CC -!- INDUCTION: By root flooding (PubMed:24363315). Induced by senescence
CC (PubMed:24659488). {ECO:0000269|PubMed:24363315,
CC ECO:0000269|PubMed:24659488}.
CC -!- MISCELLANEOUS: In rosette plants, root flooding (waterlogging) triggers
CC rapid upward (hyponastic) leaf movement representing an important
CC architectural stress response that critically determines plant
CC performance in natural habitats (Probable). Plants silencing NAC047
CC produce abnormally shaped seeds (PubMed:18849494).
CC {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:24363315}.
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DR EMBL; AC011698; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; CP002686; AEE74033.1; -; Genomic_DNA.
DR EMBL; BT005985; AAO64920.1; -; mRNA.
DR EMBL; AK227417; BAE99421.1; -; mRNA.
DR RefSeq; NP_187057.2; NM_111278.4. [Q84TD6-1]
DR AlphaFoldDB; Q84TD6; -.
DR SMR; Q84TD6; -.
DR IntAct; Q84TD6; 4.
DR STRING; 3702.AT3G04070.1; -.
DR PaxDb; Q84TD6; -.
DR PRIDE; Q84TD6; -.
DR ProteomicsDB; 251341; -. [Q84TD6-1]
DR DNASU; 819562; -.
DR EnsemblPlants; AT3G04070.1; AT3G04070.1; AT3G04070. [Q84TD6-1]
DR GeneID; 819562; -.
DR Gramene; AT3G04070.1; AT3G04070.1; AT3G04070. [Q84TD6-1]
DR KEGG; ath:AT3G04070; -.
DR Araport; AT3G04070; -.
DR TAIR; locus:2095908; AT3G04070.
DR eggNOG; ENOG502QSIY; Eukaryota.
DR InParanoid; Q84TD6; -.
DR OrthoDB; 1179931at2759; -.
DR PhylomeDB; Q84TD6; -.
DR PRO; PR:Q84TD6; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q84TD6; baseline and differential.
DR GO; GO:0005634; C:nucleus; IDA:UniProtKB.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; ISS:TAIR.
DR GO; GO:0000976; F:transcription cis-regulatory region binding; IPI:TAIR.
DR GO; GO:0009793; P:embryo development ending in seed dormancy; IMP:UniProtKB.
DR GO; GO:0010365; P:positive regulation of ethylene biosynthetic process; IDA:UniProtKB.
DR GO; GO:0009413; P:response to flooding; IMP:UniProtKB.
DR Gene3D; 2.170.150.80; -; 1.
DR InterPro; IPR003441; NAC-dom.
DR InterPro; IPR036093; NAC_dom_sf.
DR Pfam; PF02365; NAM; 1.
DR SUPFAM; SSF101941; SSF101941; 1.
DR PROSITE; PS51005; NAC; 1.
PE 2: Evidence at transcript level;
KW Alternative splicing; DNA-binding; Nucleus; Reference proteome;
KW Transcription; Transcription regulation.
FT CHAIN 1..359
FT /note="NAC transcription factor 47"
FT /id="PRO_0000437980"
FT DOMAIN 10..186
FT /note="NAC"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00353"
FT DNA_BIND 112..192
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00353"
FT REGION 147..166
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 200..226
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 359 AA; 40850 MW; 119008A968558F7F CRC64;
MISKDPRSSL PPGFRFHPTD EELILHYLRK KVSSSPVPLS IIADVDIYKS DPWDLPAKAP
FGEKEWYFFS PRDRKYPNGA RPNRAAASGY WKATGTDKLI AVPNGEGFHE NIGIKKALVF
YRGKPPKGVK TNWIMHEYRL ADSLSPKRIN SSRSGGSEVN NNFGDRNSKE YSMRLDDWVL
CRIYKKSHAS LSSPDVALVT SNQEHEENDN EPFVDRGTFL PNLQNDQPLK RQKSSCSFSN
LLDATDLTFL ANFLNETPEN RSESDFSFMI GNFSNPDIYG NHYLDQKLPQ LSSPTSETSG
IGSKRERVDF AEETINASKK MMNTYSYNNS IDQMDHSMMQ QPSFLNQELM MSSHLQYQG
