NAC54_ORYSJ
ID NAC54_ORYSJ Reviewed; 650 AA.
AC Q8H045; A3ADJ4;
DT 03-AUG-2022, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2003, sequence version 1.
DT 03-AUG-2022, entry version 122.
DE RecName: Full=NAC domain-containing protein 54 {ECO:0000303|PubMed:18813954};
DE Short=ONAC054 {ECO:0000303|PubMed:18813954};
DE AltName: Full=Protein RICE DWARF VIRUS MULTIPLICATION 1 {ECO:0000303|PubMed:18980655};
GN Name=NAC54 {ECO:0000303|PubMed:18813954};
GN Synonyms=RIM1 {ECO:0000303|PubMed:18980655};
GN OrderedLocusNames=Os03g0119966 {ECO:0000312|EMBL:BAS82017.1},
GN LOC_Os03g02800 {ECO:0000312|EMBL:ABF93685.1};
GN ORFNames=OJ1263H11.11 {ECO:0000312|EMBL:AAO15294.1},
GN OsJ_09200 {ECO:0000312|EMBL:EAZ25383.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA], TISSUE SPECIFICITY, FUNCTION, AND DISRUPTION
RP PHENOTYPE.
RX PubMed=18980655; DOI=10.1111/j.1365-313x.2008.03712.x;
RA Yoshii M., Shimizu T., Yamazaki M., Higashi T., Miyao A., Hirochika H.,
RA Omura T.;
RT "Disruption of a novel gene for a NAC-domain protein in rice confers
RT resistance to rice dwarf virus.";
RL Plant J. 57:615-625(2009).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16109971; DOI=10.1101/gr.3869505;
RG The rice chromosome 3 sequencing consortium;
RA Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B.,
RA Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T.,
RA Fadrosh D., Bera J., Weaver B., Jin S., Johri S., Reardon M., Webb K.,
RA Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T.,
RA Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R.,
RA Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., Rambo T., Currie J.,
RA Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S.S.,
RA Luo M., Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M.,
RA Pries G., Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M.,
RA Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L.,
RA O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R.,
RA Jin W., Lee H.R., Jiang J., Jackson S.;
RT "Sequence, annotation, and analysis of synteny between rice chromosome 3
RT and diverged grass species.";
RL Genome Res. 15:1284-1291(2005).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [5]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [7]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=18813954; DOI=10.1007/s00438-008-0386-6;
RA Fang Y., You J., Xie K., Xie W., Xiong L.;
RT "Systematic sequence analysis and identification of tissue-specific or
RT stress-responsive genes of NAC transcription factor family in rice.";
RL Mol. Genet. Genomics 280:547-563(2008).
RN [8]
RP FUNCTION, AND DISRUPTION PHENOTYPE.
RX PubMed=20015061; DOI=10.1111/j.1365-313x.2009.04107.x;
RA Yoshii M., Yamazaki M., Rakwal R., Kishi-Kaboshi M., Miyao A.,
RA Hirochika H.;
RT "The NAC transcription factor RIM1 of rice is a new regulator of jasmonate
RT signaling.";
RL Plant J. 61:804-815(2010).
RN [9]
RP FUNCTION, SUBCELLULAR LOCATION, AND DISRUPTION PHENOTYPE.
RX PubMed=31911455; DOI=10.1105/tpc.19.00569;
RA Sakuraba Y., Kim D., Han S.H., Kim S.H., Piao W., Yanagisawa S., An G.,
RA Paek N.C.;
RT "Multilayered regulation of membrane-bound ONAC054 is essential for
RT abscisic acid-induced leaf senescence in rice.";
RL Plant Cell 32:630-649(2020).
CC -!- FUNCTION: Transcription factor that functions as a regulator of the
CC jasmonate (JA) signaling pathway (PubMed:20015061). May regulate the
CC expression of genes encoding JA biosynthetic enzymes, such as
CC lipoxygenase 7 (CM-LOX1), allene oxide synthase 2 (AOS2) and OPDA
CC reductase 7 (OPR7) (PubMed:20015061). Involved in abscisic acid-induced
CC leaf senescence (PubMed:31911455). Activates the abscisic acid (ABA)
CC signaling-associated gene ABI5 and the senescence-associated gene NYC1
CC by directly binding to the mitochondrial dysfunction motif (MDM)
CC present in their promoters (PubMed:31911455). Possesses transcriptional
CC activator activity in yeast (PubMed:18980655). Required for the
CC multiplication of the rice dwarf virus (RDV) (PubMed:18980655).
CC {ECO:0000269|PubMed:18980655, ECO:0000269|PubMed:20015061,
CC ECO:0000269|PubMed:31911455}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00353,
CC ECO:0000269|PubMed:31911455}. Note=Nuclear import of NAC54 requires
CC cleavage of the putative C-terminal transmembrane domain.
CC {ECO:0000269|PubMed:31911455}.
CC -!- TISSUE SPECIFICITY: Expressed in leaves, roots and flowers.
CC {ECO:0000269|PubMed:18980655}.
CC -!- DOMAIN: The NAC domain includes a DNA binding domain and a dimerization
CC domain. {ECO:0000255|PROSITE-ProRule:PRU00353}.
CC -!- DISRUPTION PHENOTYPE: No visible phenotype under normal growth
CC conditions, but mutant plants show a loss of susceptibility to rice
CC dwarf virus (RDV) (PubMed:18980655). Plants carrying rim1 mutations
CC show a phenotype of root growth inhibition, semi-dwarf phenotype with
CC short roots, and sometimes twisted leaf tips (PubMed:20015061). Mutant
CC plants maintain green leaves at the age of senescence
CC (PubMed:31911455). {ECO:0000269|PubMed:18980655,
CC ECO:0000269|PubMed:20015061, ECO:0000269|PubMed:31911455}.
CC -!- MISCELLANEOUS: Under exposure to jasmonate (JA), NAC54 is degraded via
CC the 26S proteasome-dependent pathway (PubMed:20015061). Plants
CC overexpressing NAC54 show early leaf yellowing under dark- and abscisic
CC acid-induced senescence conditions (PubMed:31911455).
CC {ECO:0000269|PubMed:20015061, ECO:0000269|PubMed:31911455}.
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DR EMBL; AB265821; BAH03170.1; -; mRNA.
DR EMBL; AC118980; AAO15294.1; -; Genomic_DNA.
DR EMBL; DP000009; ABF93685.1; -; Genomic_DNA.
DR EMBL; AP008209; BAH91969.1; -; Genomic_DNA.
DR EMBL; AP014959; BAS82017.1; -; Genomic_DNA.
DR EMBL; CM000140; EAZ25383.1; -; Genomic_DNA.
DR RefSeq; XP_015628513.1; XM_015773027.1.
DR RefSeq; XP_015628514.1; XM_015773028.1.
DR RefSeq; XP_015628515.1; XM_015773029.1.
DR RefSeq; XP_015628516.1; XM_015773030.1.
DR RefSeq; XP_015628517.1; XM_015773031.1.
DR RefSeq; XP_015628518.1; XM_015773032.1.
DR RefSeq; XP_015628519.1; XM_015773033.1.
DR RefSeq; XP_015628520.1; XM_015773034.1.
DR RefSeq; XP_015628521.1; XM_015773035.1.
DR SMR; Q8H045; -.
DR STRING; 39947.Q8H045; -.
DR PRIDE; Q8H045; -.
DR EnsemblPlants; Os03t0119966-01; Os03t0119966-01; Os03g0119966.
DR GeneID; 9270943; -.
DR Gramene; Os03t0119966-01; Os03t0119966-01; Os03g0119966.
DR KEGG; osa:9270943; -.
DR eggNOG; ENOG502QV39; Eukaryota.
DR HOGENOM; CLU_024022_0_1_1; -.
DR OMA; TNPFFMN; -.
DR OrthoDB; 697995at2759; -.
DR Proteomes; UP000000763; Chromosome 3.
DR Proteomes; UP000007752; Chromosome 3.
DR Proteomes; UP000059680; Chromosome 3.
DR GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:InterPro.
DR Gene3D; 2.170.150.80; -; 1.
DR InterPro; IPR003441; NAC-dom.
DR InterPro; IPR036093; NAC_dom_sf.
DR Pfam; PF02365; NAM; 1.
DR SUPFAM; SSF101941; SSF101941; 1.
DR PROSITE; PS51005; NAC; 1.
PE 2: Evidence at transcript level;
KW Abscisic acid signaling pathway; DNA-binding;
KW Jasmonic acid signaling pathway; Nucleus; Reference proteome;
KW Transcription; Transcription regulation.
FT CHAIN 1..650
FT /note="NAC domain-containing protein 54"
FT /id="PRO_0000456301"
FT DOMAIN 6..156
FT /note="NAC"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00353"
FT DNA_BIND 105..162
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00353"
SQ SEQUENCE 650 AA; 72833 MW; 51859BB2799C163B CRC64;
MAPVSLPPGF RFHPTDEELI IYYLKRKING RQIELEIIPE VDLYKCEPWD LPEKSFLPSK
DLEWYFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVNS QRRAVGMKKT LVYYRGRAPH
GSRTDWVMHE YRLDERECET DTGLQDAYAL CRVFKKTAPG PKIIEHYGVV HHHVEQPQWM
TSSIDRSPTL DVSCDGRGDD FESSSFSFPT ETPMDSMHGG FGMQMSAPHE DGKWMQFLSE
DAFNATNPFL TNPVSANFSC LPSKVDVALE CARLQHRLTL PPLEVEDFPQ DVSLDTKIGI
LRSNPNEVDI LQEFLSVATA SQELINGSTS SYPEMWLGAS TSSASYVNEL SSLVEMGGVG
TSNHHESARL QVEIADMEVF KDEKKRVENL RGVKLVNNDL GEIVVEGDES NPTEDIIAQY
PIKVTADNSG EAGHRMTDPT DVGGIDTAPI FSQSQPDDFA AGFDDVNPNA SFDLYEKVDV
NHRLFVSRVA AAKTFFHRIE PSKKVSFHSN PAATAVSKAT EKFHFPVTTK VSGRVSIFSK
FKALIRDKFL MMRPSHSYQR LGSKETTVNE LLQIVSLLLA PKQINGCPTE QELVKKKAKE
VMKPGWGREG SNKLWLPLSK GKGISSMFLS GKWTFLTSAL AISTPAECDH
