NAC55_ARATH
ID NAC55_ARATH Reviewed; 317 AA.
AC Q9LDY8; Q8LG20;
DT 26-MAY-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 03-AUG-2022, entry version 111.
DE RecName: Full=NAC domain-containing protein 55;
DE Short=ANAC055;
DE AltName: Full=NAC domain-containing protein 3;
DE Short=AtNAC3;
GN Name=NAC055; Synonyms=NAC3; OrderedLocusNames=At3g15500; ORFNames=MJK13.16;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA].
RX PubMed=11245578; DOI=10.1242/dev.128.7.1127;
RA Takada S., Hibara K., Ishida T., Tasaka M.;
RT "The CUP-SHAPED COTYLEDON1 gene of Arabidopsis regulates shoot apical
RT meristem formation.";
RL Development 128:1127-1135(2001).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10819329; DOI=10.1093/dnares/7.2.131;
RA Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 3. I. Sequence
RT features of the regions of 4,504,864 bp covered by sixty P1 and TAC
RT clones.";
RL DNA Res. 7:131-135(2000).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130713; DOI=10.1038/35048706;
RA Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B.,
RA Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M.,
RA Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V.,
RA Choisne N., Artiguenave F., Robert C., Brottier P., Wincker P.,
RA Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H.,
RA Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H.,
RA Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A.,
RA Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H.,
RA Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J.,
RA Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B.,
RA Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D.,
RA de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E.,
RA Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G.,
RA Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X.,
RA Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M.,
RA Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B.,
RA Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J.,
RA Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C.,
RA Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y.,
RA Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K.,
RA Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A.,
RA Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T.,
RA Watanabe A., Yamada M., Yasuda M., Tabata S.;
RT "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.";
RL Nature 408:820-822(2000).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Shinn P., Chen H., Kim C.J., Quinitio C., Ecker J.R.;
RT "Arabidopsis ORF clones.";
RL Submitted (JUN-2006) to the EMBL/GenBank/DDBJ databases.
RN [7]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=15029955; DOI=10.1093/dnares/10.6.239;
RA Ooka H., Satoh K., Doi K., Nagata T., Otomo Y., Murakami K., Matsubara K.,
RA Osato N., Kawai J., Carninci P., Hayashizaki Y., Suzuki K., Kojima K.,
RA Takahara Y., Yamamoto K., Kikuchi S.;
RT "Comprehensive analysis of NAC family genes in Oryza sativa and Arabidopsis
RT thaliana.";
RL DNA Res. 10:239-247(2003).
RN [8]
RP FUNCTION, TISSUE SPECIFICITY, AND INDUCTION.
RX PubMed=15319476; DOI=10.1105/tpc.104.022699;
RA Tran L.-S.H., Nakashima K., Sakuma Y., Simpson S.D., Fujita Y.,
RA Maruyama K., Fujita M., Seki M., Shinozaki K., Yamaguchi-Shinozaki K.;
RT "Isolation and functional analysis of Arabidopsis stress-inducible NAC
RT transcription factors that bind to a drought-responsive cis-element in the
RT early responsive to dehydration stress 1 promoter.";
RL Plant Cell 16:2481-2498(2004).
CC -!- FUNCTION: Transcription factors that bind specifically to the 5'-
CC CATGTG-3' motif. {ECO:0000269|PubMed:15319476}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
CC -!- TISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|PubMed:15319476}.
CC -!- INDUCTION: Strongly induced by high salinity. Slightly up-regulated by
CC drought, abscisic acid (ABA) and jasmonic acid. Not induced by cold
CC treatment. {ECO:0000269|PubMed:15319476}.
CC -!- DOMAIN: The NAC domain includes a DNA-binding domain and a dimerization
CC domain.
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DR EMBL; AB049070; BAB20599.1; -; mRNA.
DR EMBL; AB022218; BAB02379.1; -; Genomic_DNA.
DR EMBL; AC024081; AAF35416.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE75683.1; -; Genomic_DNA.
DR EMBL; AY084508; AAM61076.1; -; mRNA.
DR EMBL; BT025659; ABF74720.1; -; mRNA.
DR RefSeq; NP_188169.1; NM_112418.4.
DR AlphaFoldDB; Q9LDY8; -.
DR SMR; Q9LDY8; -.
DR BioGRID; 6123; 13.
DR STRING; 3702.AT3G15500.1; -.
DR iPTMnet; Q9LDY8; -.
DR PaxDb; Q9LDY8; -.
DR PRIDE; Q9LDY8; -.
DR ProteomicsDB; 251311; -.
DR DNASU; 820789; -.
DR EnsemblPlants; AT3G15500.1; AT3G15500.1; AT3G15500.
DR GeneID; 820789; -.
DR Gramene; AT3G15500.1; AT3G15500.1; AT3G15500.
DR KEGG; ath:AT3G15500; -.
DR Araport; AT3G15500; -.
DR TAIR; locus:2090176; AT3G15500.
DR eggNOG; ENOG502QRBC; Eukaryota.
DR HOGENOM; CLU_035664_8_4_1; -.
DR InParanoid; Q9LDY8; -.
DR OMA; PHYNRRP; -.
DR OrthoDB; 925823at2759; -.
DR PhylomeDB; Q9LDY8; -.
DR PRO; PR:Q9LDY8; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q9LDY8; baseline and differential.
DR Genevisible; Q9LDY8; AT.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IDA:TAIR.
DR GO; GO:0009867; P:jasmonic acid mediated signaling pathway; TAS:TAIR.
DR GO; GO:0009414; P:response to water deprivation; IMP:TAIR.
DR Gene3D; 2.170.150.80; -; 1.
DR InterPro; IPR003441; NAC-dom.
DR InterPro; IPR036093; NAC_dom_sf.
DR Pfam; PF02365; NAM; 1.
DR SUPFAM; SSF101941; SSF101941; 1.
DR PROSITE; PS51005; NAC; 1.
PE 2: Evidence at transcript level;
KW DNA-binding; Nucleus; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..317
FT /note="NAC domain-containing protein 55"
FT /id="PRO_0000376617"
FT DOMAIN 14..162
FT /note="NAC"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00353"
FT DNA_BIND 111..168
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00353"
FT CONFLICT 150
FT /note="K -> N (in Ref. 5; AAM61076)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 317 AA; 35405 MW; 3DE2442D57EDB03B CRC64;
MGLQELDPLA QLSLPPGFRF YPTDEELMVE YLCRKAAGHD FSLQLIAEID LYKFDPWVLP
SKALFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT DKVISTEGRR VGIKKALVFY
IGKAPKGTKT NWIMHEYRLI EPSRRNGSTK LDDWVLCRIY KKQTSAQKQA YNNLMTSGRE
YSNNGSSTSS SSHQYDDVLE SLHEIDNRSL GFAAGSSNAL PHSHRPVLTN HKTGFQGLAR
EPSFDWANLI GQNSVPELGL SHNVPSIRYG DGGTQQQTEG IPRFNNNSDV SANQGFSVDP
VNGFGYSGQQ SSGFGFI
