NAC56_ARATH
ID NAC56_ARATH Reviewed; 364 AA.
AC Q9LD44;
DT 24-JUN-2015, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 03-AUG-2022, entry version 134.
DE RecName: Full=NAC transcription factor 56 {ECO:0000303|PubMed:15029955};
DE Short=AtNAC056 {ECO:0000303|PubMed:15029955};
DE AltName: Full=NAC domain-containing protein 2 {ECO:0000303|PubMed:11245578};
DE Short=AtNAC2 {ECO:0000303|PubMed:11245578};
DE AltName: Full=Protein NAC-REGULATED SEED MORPHOLOGY 1 {ECO:0000303|PubMed:18849494};
GN Name=NAC056 {ECO:0000303|PubMed:15029955};
GN Synonyms=ANAC056 {ECO:0000303|PubMed:15029955},
GN NAC2 {ECO:0000303|PubMed:11245578}, NARS1 {ECO:0000303|PubMed:18849494};
GN OrderedLocusNames=At3g15510 {ECO:0000312|Araport:AT3G15510};
GN ORFNames=MJK13.17 {ECO:0000312|EMBL:AAF35417.1};
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=11245578; DOI=10.1242/dev.128.7.1127;
RA Takada S., Hibara K., Ishida T., Tasaka M.;
RT "The CUP-SHAPED COTYLEDON1 gene of Arabidopsis regulates shoot apical
RT meristem formation.";
RL Development 128:1127-1135(2001).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10819329; DOI=10.1093/dnares/7.2.131;
RA Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 3. I. Sequence
RT features of the regions of 4,504,864 bp covered by sixty P1 and TAC
RT clones.";
RL DNA Res. 7:131-135(2000).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130713; DOI=10.1038/35048706;
RA Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B.,
RA Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M.,
RA Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V.,
RA Choisne N., Artiguenave F., Robert C., Brottier P., Wincker P.,
RA Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H.,
RA Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H.,
RA Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A.,
RA Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H.,
RA Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J.,
RA Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B.,
RA Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D.,
RA de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E.,
RA Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G.,
RA Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X.,
RA Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M.,
RA Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B.,
RA Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J.,
RA Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C.,
RA Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y.,
RA Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K.,
RA Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A.,
RA Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T.,
RA Watanabe A., Yamada M., Yasuda M., Tabata S.;
RT "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.";
RL Nature 408:820-822(2000).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [6]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=15029955; DOI=10.1093/dnares/10.6.239;
RA Ooka H., Satoh K., Doi K., Nagata T., Otomo Y., Murakami K., Matsubara K.,
RA Osato N., Kawai J., Carninci P., Hayashizaki Y., Suzuki K., Kojima K.,
RA Takahara Y., Yamamoto K., Kikuchi S.;
RT "Comprehensive analysis of NAC family genes in Oryza sativa and Arabidopsis
RT thaliana.";
RL DNA Res. 10:239-247(2003).
RN [7]
RP TISSUE SPECIFICITY.
RX PubMed=15100403; DOI=10.1105/tpc.021741;
RA Wellmer F., Riechmann J.L., Alves-Ferreira M., Meyerowitz E.M.;
RT "Genome-wide analysis of spatial gene expression in Arabidopsis flowers.";
RL Plant Cell 16:1314-1326(2004).
RN [8]
RP TISSUE SPECIFICITY, AND DEVELOPMENTAL STAGE.
RX PubMed=16055634; DOI=10.1105/tpc.105.033985;
RA Nakayama N., Arroyo J.M., Simorowski J., May B., Martienssen R.,
RA Irish V.F.;
RT "Gene trap lines define domains of gene regulation in Arabidopsis petals
RT and stamens.";
RL Plant Cell 17:2486-2506(2005).
RN [9]
RP INDUCTION BY JASMONIC ACID, AND GENE FAMILY.
RX PubMed=16805732; DOI=10.1111/j.1365-313x.2006.02756.x;
RA Mandaokar A., Thines B., Shin B., Lange B.M., Choi G., Koo Y.J., Yoo Y.J.,
RA Choi Y.D., Choi G., Browse J.;
RT "Transcriptional regulators of stamen development in Arabidopsis identified
RT by transcriptional profiling.";
RL Plant J. 46:984-1008(2006).
RN [10]
RP FUNCTION, DISRUPTION PHENOTYPE, SUBCELLULAR LOCATION, AND TISSUE
RP SPECIFICITY.
RC STRAIN=cv. Columbia;
RX PubMed=18849494; DOI=10.1105/tpc.108.060160;
RA Kunieda T., Mitsuda N., Ohme-Takagi M., Takeda S., Aida M., Tasaka M.,
RA Kondo M., Nishimura M., Hara-Nishimura I.;
RT "NAC family proteins NARS1/NAC2 and NARS2/NAM in the outer integument
RT regulate embryogenesis in Arabidopsis.";
RL Plant Cell 20:2631-2642(2008).
CC -!- FUNCTION: Transcription factor of the NAC family (Probable). Together
CC with NAC018/NARS2, regulates embryogenesis by regulating the
CC development and degeneration of ovule integuments, a process required
CC for intertissue communication between the embryo and the maternal
CC integument (PubMed:18849494). {ECO:0000269|PubMed:18849494,
CC ECO:0000305}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000269|PubMed:18849494}.
CC -!- TISSUE SPECIFICITY: Stamen specific, in anthers from stage 8
CC (PubMed:15100403, PubMed:16055634). Expressed in the outer integument,
CC but seems not expressed in the embryo at the torpedo stage
CC (PubMed:18849494). {ECO:0000269|PubMed:15100403,
CC ECO:0000269|PubMed:16055634, ECO:0000269|PubMed:18849494}.
CC -!- DEVELOPMENTAL STAGE: Expressed throughout anthers from stages 8 to 12.
CC Later confined to distal region of anthers from stage 13.
CC {ECO:0000269|PubMed:16055634}.
CC -!- INDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}.
CC -!- DOMAIN: The NAC domain includes a DNA binding domain and a dimerization
CC domain. {ECO:0000255|PROSITE-ProRule:PRU00353}.
CC -!- DISRUPTION PHENOTYPE: When associated with disruption in NAC018/NARS2,
CC abnormally shaped seeds, defect in embryogenesis sometimes arrested at
CC the torpedo-shaped embryo stage thus leading to partial embryonic
CC lethality, markedly delayed integuments degeneration, and delay of
CC silique senescence. {ECO:0000269|PubMed:18849494}.
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DR EMBL; AB049071; BAB20600.1; -; mRNA.
DR EMBL; AB022218; BAB02380.1; -; Genomic_DNA.
DR EMBL; AC024081; AAF35417.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE75684.1; -; Genomic_DNA.
DR EMBL; BT004079; AAO42106.1; -; mRNA.
DR EMBL; BT005044; AAO50577.1; -; mRNA.
DR RefSeq; NP_188170.1; NM_112419.4.
DR AlphaFoldDB; Q9LD44; -.
DR SMR; Q9LD44; -.
DR STRING; 3702.AT3G15510.1; -.
DR PaxDb; Q9LD44; -.
DR PRIDE; Q9LD44; -.
DR ProteomicsDB; 251265; -.
DR EnsemblPlants; AT3G15510.1; AT3G15510.1; AT3G15510.
DR GeneID; 820790; -.
DR Gramene; AT3G15510.1; AT3G15510.1; AT3G15510.
DR KEGG; ath:AT3G15510; -.
DR Araport; AT3G15510; -.
DR TAIR; locus:2090186; AT3G15510.
DR eggNOG; ENOG502QRBC; Eukaryota.
DR HOGENOM; CLU_035664_8_1_1; -.
DR InParanoid; Q9LD44; -.
DR OMA; NIAVCTN; -.
DR OrthoDB; 1189960at2759; -.
DR PhylomeDB; Q9LD44; -.
DR PRO; PR:Q9LD44; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q9LD44; baseline and differential.
DR Genevisible; Q9LD44; AT.
DR GO; GO:0005634; C:nucleus; IDA:UniProtKB.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; ISS:TAIR.
DR GO; GO:0000976; F:transcription cis-regulatory region binding; IPI:TAIR.
DR GO; GO:0080060; P:integument development; IMP:UniProtKB.
DR GO; GO:0045995; P:regulation of embryonic development; IMP:UniProtKB.
DR GO; GO:0009753; P:response to jasmonic acid; IEP:UniProtKB.
DR GO; GO:0048317; P:seed morphogenesis; IMP:UniProtKB.
DR GO; GO:0048731; P:system development; IBA:GO_Central.
DR Gene3D; 2.170.150.80; -; 1.
DR InterPro; IPR003441; NAC-dom.
DR InterPro; IPR036093; NAC_dom_sf.
DR Pfam; PF02365; NAM; 1.
DR SUPFAM; SSF101941; SSF101941; 1.
DR PROSITE; PS51005; NAC; 1.
PE 2: Evidence at transcript level;
KW DNA-binding; Nucleus; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..364
FT /note="NAC transcription factor 56"
FT /id="PRO_0000433305"
FT DOMAIN 17..178
FT /note="NAC"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00353"
FT DNA_BIND 116..184
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00353"
FT REGION 1..23
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 364 AA; 40027 MW; FDD45749AC0157B6 CRC64;
MESTDSSGGP PPPQPNLPPG FRFHPTDEEL VVHYLKRKAA SAPLPVAIIA EVDLYKFDPW
ELPAKASFGE QEWYFFSPRD RKYPNGARPN RAATSGYWKA TGTDKPVLAS DGNQKVGVKK
ALVFYSGKPP KGVKSDWIMH EYRLIENKPN NRPPGCDFGN KKNSLRLDDW VLCRIYKKNN
ASRHVDNDKD HDMIDYIFRK IPPSLSMAAA STGLHQHHHN VSRSMNFFPG KFSGGGYGIF
SDGGNTSIYD GGGMINNIGT DSVDHDNNAD VVGLNHASSS GPMMMANLKR TLPVPYWPVA
DEEQDASPSK RFHGVGGGGG DCSNMSSSMM EETPPLMQQQ GGVLGDGLFR TTSYQLPGLN
WYSS
