NAC79_ARATH
ID NAC79_ARATH Reviewed; 329 AA.
AC Q9FLR3; B2CTN9; Q8LAN9;
DT 17-FEB-2016, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2001, sequence version 1.
DT 03-AUG-2022, entry version 119.
DE RecName: Full=NAC domain-containing protein 79 {ECO:0000303|PubMed:15029955};
DE Short=ANAC79 {ECO:0000303|PubMed:15029955};
DE Short=ANAC80 {ECO:0000303|PubMed:15029955};
DE Short=AtNAC79 {ECO:0000303|PubMed:15029955};
DE Short=AtNAC80 {ECO:0000303|PubMed:15029955};
GN Name=NAC079 {ECO:0000303|PubMed:15029955};
GN Synonyms=TGT2 {ECO:0000303|PubMed:15723790};
GN OrderedLocusNames=At5g07680 {ECO:0000312|Araport:AT5G07680};
GN ORFNames=MBK20.13 {ECO:0000312|EMBL:BAB11446.1};
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=9628582; DOI=10.1093/dnares/5.1.41;
RA Sato S., Kaneko T., Kotani H., Nakamura Y., Asamizu E., Miyajima N.,
RA Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. IV. Sequence
RT features of the regions of 1,456,315 bp covered by nineteen physically
RT assigned P1 and TAC clones.";
RL DNA Res. 5:41-54(1998).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
RN [6]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 170-309, AND REGULATION BY MIR164.
RC STRAIN=cv. Ag-0, cv. An-1, cv. Bay-0, cv. Br-0, cv. C24, cv. Ct-1,
RC cv. Cvi-0, cv. Ei-2, cv. Ga-0, cv. Gy-0, cv. Ll-0, cv. Mrk-0, cv. Ms-0,
RC cv. Mt-0, cv. Nd-1, cv. Nok-3, cv. Oy-0, cv. Sorbo, cv. Wa-1,
RC cv. Wassilewskija, cv. Wei-0, and cv. Wt-5;
RX PubMed=18305205; DOI=10.1104/pp.108.116582;
RA Ehrenreich I.M., Purugganan M.D.;
RT "Sequence variation of microRNAs and their binding sites in Arabidopsis.";
RL Plant Physiol. 146:1974-1982(2008).
RN [7]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=15029955; DOI=10.1093/dnares/10.6.239;
RA Ooka H., Satoh K., Doi K., Nagata T., Otomo Y., Murakami K., Matsubara K.,
RA Osato N., Kawai J., Carninci P., Hayashizaki Y., Suzuki K., Kojima K.,
RA Takahara Y., Yamamoto K., Kikuchi S.;
RT "Comprehensive analysis of NAC family genes in Oryza sativa and Arabidopsis
RT thaliana.";
RL DNA Res. 10:239-247(2003).
RN [8]
RP INDUCTION.
RX PubMed=15294871; DOI=10.1242/dev.01320;
RA Laufs P., Peaucelle A., Morin H., Traas J.;
RT "MicroRNA regulation of the CUC genes is required for boundary size control
RT in Arabidopsis meristems.";
RL Development 131:4311-4322(2004).
RN [9]
RP INDUCTION.
RX PubMed=15723790; DOI=10.1016/j.cub.2005.02.017;
RA Baker C.C., Sieber P., Wellmer F., Meyerowitz E.M.;
RT "The early extra petals1 mutant uncovers a role for microRNA miR164c in
RT regulating petal number in Arabidopsis.";
RL Curr. Biol. 15:303-315(2005).
RN [10]
RP TISSUE SPECIFICITY, AND REGULATION BY MIR164.
RX PubMed=17098808; DOI=10.1105/tpc.106.045617;
RA Nikovics K., Blein T., Peaucelle A., Ishida T., Morin H., Aida M.,
RA Laufs P.;
RT "The balance between the MIR164A and CUC2 genes controls leaf margin
RT serration in Arabidopsis.";
RL Plant Cell 18:2929-2945(2006).
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00353}.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=2;
CC Name=1;
CC IsoId=Q9FLR3-1; Sequence=Displayed;
CC Name=2; Synonyms=NAC080 {ECO:0000303|PubMed:15029955};
CC IsoId=Q9FLR3-2; Sequence=VSP_058070;
CC -!- TISSUE SPECIFICITY: Expressed at low levels in leaves.
CC {ECO:0000269|PubMed:17098808}.
CC -!- INDUCTION: Repressed post-transcriptionally by miR164.
CC {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808,
CC ECO:0000269|PubMed:18305205, ECO:0000305|PubMed:15723790}.
CC -!- DOMAIN: The NAC domain includes a DNA binding domain and a dimerization
CC domain. {ECO:0000255|PROSITE-ProRule:PRU00353}.
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DR EMBL; AB010070; BAB11446.1; -; Genomic_DNA.
DR EMBL; CP002688; AED91192.1; -; Genomic_DNA.
DR EMBL; CP002688; AED91193.1; -; Genomic_DNA.
DR EMBL; BT006419; AAP21227.1; -; mRNA.
DR EMBL; AK228027; BAE99988.1; -; mRNA.
DR EMBL; AY087700; AAM65237.1; -; mRNA.
DR EMBL; EU550240; ACB31002.1; -; Genomic_DNA.
DR EMBL; EU550263; ACB31025.1; -; Genomic_DNA.
DR EMBL; EU550241; ACB31003.1; -; Genomic_DNA.
DR EMBL; EU550243; ACB31005.1; -; Genomic_DNA.
DR EMBL; EU550244; ACB31006.1; -; Genomic_DNA.
DR EMBL; EU550247; ACB31009.1; -; Genomic_DNA.
DR EMBL; EU550245; ACB31007.1; -; Genomic_DNA.
DR EMBL; EU550248; ACB31010.1; -; Genomic_DNA.
DR EMBL; EU550249; ACB31011.1; -; Genomic_DNA.
DR EMBL; EU550250; ACB31012.1; -; Genomic_DNA.
DR EMBL; EU550251; ACB31013.1; -; Genomic_DNA.
DR EMBL; EU550252; ACB31014.1; -; Genomic_DNA.
DR EMBL; EU550253; ACB31015.1; -; Genomic_DNA.
DR EMBL; EU550254; ACB31016.1; -; Genomic_DNA.
DR EMBL; EU550255; ACB31017.1; -; Genomic_DNA.
DR EMBL; EU550256; ACB31018.1; -; Genomic_DNA.
DR EMBL; EU550257; ACB31019.1; -; Genomic_DNA.
DR EMBL; EU550258; ACB31020.1; -; Genomic_DNA.
DR EMBL; EU550259; ACB31021.1; -; Genomic_DNA.
DR EMBL; EU550260; ACB31022.1; -; Genomic_DNA.
DR EMBL; EU550261; ACB31023.1; -; Genomic_DNA.
DR EMBL; EU550262; ACB31024.1; -; Genomic_DNA.
DR RefSeq; NP_568182.2; NM_120850.4. [Q9FLR3-1]
DR RefSeq; NP_850789.1; NM_180458.1. [Q9FLR3-2]
DR AlphaFoldDB; Q9FLR3; -.
DR SMR; Q9FLR3; -.
DR STRING; 3702.AT5G07680.1; -.
DR PaxDb; Q9FLR3; -.
DR PRIDE; Q9FLR3; -.
DR ProteomicsDB; 251314; -. [Q9FLR3-1]
DR DNASU; 830661; -.
DR EnsemblPlants; AT5G07680.1; AT5G07680.1; AT5G07680. [Q9FLR3-1]
DR EnsemblPlants; AT5G07680.2; AT5G07680.2; AT5G07680. [Q9FLR3-2]
DR GeneID; 830661; -.
DR Gramene; AT5G07680.1; AT5G07680.1; AT5G07680. [Q9FLR3-1]
DR Gramene; AT5G07680.2; AT5G07680.2; AT5G07680. [Q9FLR3-2]
DR KEGG; ath:AT5G07680; -.
DR Araport; AT5G07680; -.
DR TAIR; locus:2160324; AT5G07680.
DR eggNOG; ENOG502QR2M; Eukaryota.
DR InParanoid; Q9FLR3; -.
DR PhylomeDB; Q9FLR3; -.
DR PRO; PR:Q9FLR3; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q9FLR3; baseline and differential.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; ISS:TAIR.
DR GO; GO:0000976; F:transcription cis-regulatory region binding; IPI:TAIR.
DR Gene3D; 2.170.150.80; -; 1.
DR InterPro; IPR003441; NAC-dom.
DR InterPro; IPR036093; NAC_dom_sf.
DR Pfam; PF02365; NAM; 1.
DR SUPFAM; SSF101941; SSF101941; 1.
DR PROSITE; PS51005; NAC; 1.
PE 2: Evidence at transcript level;
KW Alternative splicing; DNA-binding; Nucleus; Reference proteome;
KW Transcription; Transcription regulation.
FT CHAIN 1..329
FT /note="NAC domain-containing protein 79"
FT /id="PRO_0000435409"
FT DOMAIN 17..167
FT /note="NAC"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00353"
FT DNA_BIND 114..173
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00353"
FT VAR_SEQ 1..14
FT /note="Missing (in isoform 2)"
FT /id="VSP_058070"
SQ SEQUENCE 329 AA; 37518 MW; 8211824FD93933EC CRC64;
METFGVFHKE DDEQMDLPPG FRFHPTDEEL ITHYLHKKVL DLGFSAKAIG EVDLNKAEPW
ELPYKAKIGE KEWYFFCVRD RKYPTGLRTN RATQAGYWKA TGKDKEIFRG KSLVGMKKTL
VFYRGRAPKG QKTNWVMHEY RLDGKLSAHN LPKTAKNEWV ICRVFHKTAG GKKIPISTLI
RIGSYGTGSS LPPLTDSSPY NDKTKTEPVY VPCFSNQAET RGTILNCFSN PSLSSIQPDF
LQMIPLYQPQ SLNISESSNP VLTQEQSVLQ AMMENNRRQN FKTLSISQET GVSNTDNSSV
FEFGRKRFDH QEVPSPSSGP VDLEPFWNY
