NAC82_ARATH
ID NAC82_ARATH Reviewed; 489 AA.
AC Q9FY82;
DT 24-JUN-2015, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2001, sequence version 1.
DT 25-MAY-2022, entry version 127.
DE RecName: Full=NAC domain-containing protein 82 {ECO:0000303|PubMed:15029955};
DE Short=ANAC082 {ECO:0000303|PubMed:15029955};
DE AltName: Full=Protein VND-INTERACTING 1 {ECO:0000303|PubMed:20388856};
GN Name=NAC082 {ECO:0000303|PubMed:15029955};
GN Synonyms=VNI1 {ECO:0000303|PubMed:20388856};
GN OrderedLocusNames=At5g09330 {ECO:0000312|Araport:AT5G09330};
GN ORFNames=T5E8.130 {ECO:0000312|EMBL:CAC05459.1};
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130714; DOI=10.1038/35048507;
RA Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E.,
RA Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., Kohara M.,
RA Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Naruo K.,
RA Okumura S., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M.,
RA Yasuda M., Sato S., de la Bastide M., Huang E., Spiegel L., Gnoj L.,
RA O'Shaughnessy A., Preston R., Habermann K., Murray J., Johnson D.,
RA Rohlfing T., Nelson J., Stoneking T., Pepin K., Spieth J., Sekhon M.,
RA Armstrong J., Becker M., Belter E., Cordum H., Cordes M., Courtney L.,
RA Courtney W., Dante M., Du H., Edwards J., Fryman J., Haakensen B.,
RA Lamar E., Latreille P., Leonard S., Meyer R., Mulvaney E., Ozersky P.,
RA Riley A., Strowmatt C., Wagner-McPherson C., Wollam A., Yoakum M., Bell M.,
RA Dedhia N., Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D.,
RA Baker J., Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A.,
RA Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I.,
RA Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T.,
RA Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S., Langham S.-A.,
RA McCullagh B., Robben J., Grymonprez B., Zimmermann W., Ramsperger U.,
RA Wedler H., Balke K., Wedler E., Peters S., van Staveren M., Dirkse W.,
RA Mooijman P., Klein Lankhorst R., Weitzenegger T., Bothe G., Rose M.,
RA Hauf J., Berneiser S., Hempel S., Feldpausch M., Lamberth S.,
RA Villarroel R., Gielen J., Ardiles W., Bents O., Lemcke K., Kolesov G.,
RA Mayer K.F.X., Rudd S., Schoof H., Schueller C., Zaccaria P., Mewes H.-W.,
RA Bevan M., Fransz P.F.;
RT "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.";
RL Nature 408:823-826(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=19423640; DOI=10.1093/dnares/dsp009;
RA Iida K., Fukami-Kobayashi K., Toyoda A., Sakaki Y., Kobayashi M., Seki M.,
RA Shinozaki K.;
RT "Analysis of multiple occurrences of alternative splicing events in
RT Arabidopsis thaliana using novel sequenced full-length cDNAs.";
RL DNA Res. 16:155-164(2009).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Cheuk R.F., Chen H., Kim C.J., Shinn P., Ecker J.R.;
RT "Arabidopsis ORF clones.";
RL Submitted (DEC-2004) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=15029955; DOI=10.1093/dnares/10.6.239;
RA Ooka H., Satoh K., Doi K., Nagata T., Otomo Y., Murakami K., Matsubara K.,
RA Osato N., Kawai J., Carninci P., Hayashizaki Y., Suzuki K., Kojima K.,
RA Takahara Y., Yamamoto K., Kikuchi S.;
RT "Comprehensive analysis of NAC family genes in Oryza sativa and Arabidopsis
RT thaliana.";
RL DNA Res. 10:239-247(2003).
RN [6]
RP INTERACTION WITH NAC030/VND7, AND TISSUE SPECIFICITY.
RX PubMed=20388856; DOI=10.1105/tpc.108.064048;
RA Yamaguchi M., Ohtani M., Mitsuda N., Kubo M., Ohme-Takagi M., Fukuda H.,
RA Demura T.;
RT "VND-INTERACTING2, a NAC domain transcription factor, negatively regulates
RT xylem vessel formation in Arabidopsis.";
RL Plant Cell 22:1249-1263(2010).
CC -!- FUNCTION: Transcriptional regulator that binds specific DNA sequences
CC on the promoter regions of target genes.
CC {ECO:0000250|UniProtKB:Q9C8W9}.
CC -!- SUBUNIT: Interacts with NAC030/VND7. {ECO:0000269|PubMed:20388856}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00353}.
CC -!- TISSUE SPECIFICITY: Expressed in the epidermal cells of the root apical
CC region. {ECO:0000269|PubMed:20388856}.
CC -!- DOMAIN: The NAC domain includes a DNA binding domain and a dimerization
CC domain. {ECO:0000255|PROSITE-ProRule:PRU00353}.
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DR EMBL; AL391712; CAC05459.1; -; Genomic_DNA.
DR EMBL; CP002688; AED91375.1; -; Genomic_DNA.
DR EMBL; CP002688; AED91376.1; -; Genomic_DNA.
DR EMBL; CP002688; AED91377.1; -; Genomic_DNA.
DR EMBL; CP002688; AED91378.1; -; Genomic_DNA.
DR EMBL; CP002688; ANM68338.1; -; Genomic_DNA.
DR EMBL; AK317217; BAH19899.1; -; mRNA.
DR EMBL; BT020263; AAV84484.1; -; mRNA.
DR RefSeq; NP_001078551.1; NM_001085082.1.
DR RefSeq; NP_001078552.1; NM_001085083.1.
DR RefSeq; NP_001154700.1; NM_001161228.2.
DR RefSeq; NP_001330102.1; NM_001343045.1.
DR RefSeq; NP_196495.1; NM_120969.4.
DR AlphaFoldDB; Q9FY82; -.
DR SMR; Q9FY82; -.
DR IntAct; Q9FY82; 4.
DR STRING; 3702.AT5G09330.2; -.
DR PaxDb; Q9FY82; -.
DR PRIDE; Q9FY82; -.
DR ProteomicsDB; 251033; -.
DR EnsemblPlants; AT5G09330.1; AT5G09330.1; AT5G09330.
DR EnsemblPlants; AT5G09330.2; AT5G09330.2; AT5G09330.
DR EnsemblPlants; AT5G09330.3; AT5G09330.3; AT5G09330.
DR EnsemblPlants; AT5G09330.4; AT5G09330.4; AT5G09330.
DR EnsemblPlants; AT5G09330.5; AT5G09330.5; AT5G09330.
DR GeneID; 830792; -.
DR Gramene; AT5G09330.1; AT5G09330.1; AT5G09330.
DR Gramene; AT5G09330.2; AT5G09330.2; AT5G09330.
DR Gramene; AT5G09330.3; AT5G09330.3; AT5G09330.
DR Gramene; AT5G09330.4; AT5G09330.4; AT5G09330.
DR Gramene; AT5G09330.5; AT5G09330.5; AT5G09330.
DR KEGG; ath:AT5G09330; -.
DR Araport; AT5G09330; -.
DR TAIR; locus:2184742; AT5G09330.
DR eggNOG; ENOG502QS6I; Eukaryota.
DR HOGENOM; CLU_035664_2_1_1; -.
DR InParanoid; Q9FY82; -.
DR OMA; QDLTAPF; -.
DR OrthoDB; 750924at2759; -.
DR PhylomeDB; Q9FY82; -.
DR PRO; PR:Q9FY82; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q9FY82; baseline and differential.
DR Genevisible; Q9FY82; AT.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; ISS:TAIR.
DR GO; GO:0000976; F:transcription cis-regulatory region binding; IPI:TAIR.
DR Gene3D; 2.170.150.80; -; 1.
DR InterPro; IPR003441; NAC-dom.
DR InterPro; IPR036093; NAC_dom_sf.
DR Pfam; PF02365; NAM; 1.
DR SUPFAM; SSF101941; SSF101941; 1.
DR PROSITE; PS51005; NAC; 1.
PE 1: Evidence at protein level;
KW DNA-binding; Nucleus; Reference proteome; Repeat; Transcription;
KW Transcription regulation.
FT CHAIN 1..489
FT /note="NAC domain-containing protein 82"
FT /id="PRO_0000433240"
FT DOMAIN 6..156
FT /note="NAC"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00353"
FT REPEAT 333..345
FT /note="1"
FT /evidence="ECO:0000305|PubMed:20388856"
FT REPEAT 346..358
FT /note="2"
FT /evidence="ECO:0000305|PubMed:20388856"
FT REPEAT 359..371
FT /note="3"
FT /evidence="ECO:0000305|PubMed:20388856"
FT REPEAT 372..384
FT /note="4"
FT /evidence="ECO:0000305|PubMed:20388856"
FT REPEAT 385..397
FT /note="5"
FT /evidence="ECO:0000305|PubMed:20388856"
FT REPEAT 398..410
FT /note="6"
FT /evidence="ECO:0000305|PubMed:20388856"
FT REPEAT 411..423
FT /note="7"
FT /evidence="ECO:0000305|PubMed:20388856"
FT REPEAT 424..436
FT /note="8"
FT /evidence="ECO:0000305|PubMed:20388856"
FT REPEAT 437..449
FT /note="9"
FT /evidence="ECO:0000305|PubMed:20388856"
FT DNA_BIND 105..162
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00353"
FT REGION 162..195
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 183..198
FT /note="PEST-like"
FT /evidence="ECO:0000305|PubMed:20388856"
FT REGION 333..449
FT /note="9 X 13 AA tandem repeat of L-[QH]-D-[LH]-T-[AS]-P-
FT [FL]-N-[PH]-QTG"
FT REGION 416..489
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 416..465
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 489 AA; 54442 MW; 0E0DF65418B247EE CRC64;
MGKTQLAPGF RFHPTDVELV RYYLKRKILG KKLLVDAIAE VDIYKFEPPD LPDMSFIRSG
DLKWHFFCPR EKKYASGVRA NRATECGYWK TTGKERPVLC NSEVVGKIKT LVYHFGKSPR
GERTDWVMHE YRLDDKVLTQ MNVPQDTYVV CVLFKKDGPG PRNGAQYGAP FKEEDWSDEE
VRTDVPSTSN PTNLLEPSKE TTLALTAPDD SNKDCFGGMI SESCVSDFLP ATTNTTSELP
HPSDAATTPM STAPLAETVQ TPNNDDLYSM LDLFDDDEEF LGFNNNEVRY DPGVSAPVCL
EEEGIFNGLP ELSSMPRTAS YDLVENSELY LELQDLTAPL NPQTGLQDLT APFNPQTGLQ
DLTAPFNHQT GLQDHTAPFN PQTGLQDHTA PFNHQTGLQD LTAPFNPQTG LQDLTAPFNP
QTGLHDLTSP FNPQTGLQDL TAPLNPQTGN RNDPRSSSFL YNQGHFDFSG GNDDDPYGFS
ASMRHRPKM
