NAP1A_ORYSJ
ID NAP1A_ORYSJ Reviewed; 378 AA.
AC Q5VND6; A0A0P0WSD3;
DT 16-OCT-2013, integrated into UniProtKB/Swiss-Prot.
DT 07-DEC-2004, sequence version 1.
DT 03-AUG-2022, entry version 103.
DE RecName: Full=Nucleosome assembly protein 1;1;
DE Short=OsNAP1;1;
DE AltName: Full=Nucleosome assembly protein 1-like 1;
DE Short=OsNAP1_L1;
DE Flags: Precursor;
GN Name=NAP1;1; Synonyms=NAP1_L1;
GN OrderedLocusNames=Os06g0149400, LOC_Os06g05660;
GN ORFNames=OsJ_20136, P0624B04.18, P0710H01.4;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
CC -!- FUNCTION: May modulate chromatin structure by regulation of nucleosome
CC assembly/disassembly. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000250}. Cytoplasm {ECO:0000250}.
CC -!- DOMAIN: The acidic domain is probably involved in the interaction with
CC histones.
CC -!- SIMILARITY: Belongs to the nucleosome assembly protein (NAP) family.
CC {ECO:0000305}.
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DR EMBL; AP003632; BAD68630.1; -; Genomic_DNA.
DR EMBL; AP004806; BAD69039.1; -; Genomic_DNA.
DR EMBL; AP008212; BAF18730.1; -; Genomic_DNA.
DR EMBL; AP014962; BAS96173.1; -; Genomic_DNA.
DR EMBL; CM000143; EEE65092.1; -; Genomic_DNA.
DR EMBL; AK071177; BAG92354.1; -; mRNA.
DR RefSeq; XP_015644392.1; XM_015788906.1.
DR AlphaFoldDB; Q5VND6; -.
DR SMR; Q5VND6; -.
DR STRING; 4530.OS06T0149400-01; -.
DR iPTMnet; Q5VND6; -.
DR PaxDb; Q5VND6; -.
DR PRIDE; Q5VND6; -.
DR EnsemblPlants; Os06t0149400-01; Os06t0149400-01; Os06g0149400.
DR GeneID; 4340137; -.
DR Gramene; Os06t0149400-01; Os06t0149400-01; Os06g0149400.
DR KEGG; osa:4340137; -.
DR eggNOG; KOG1507; Eukaryota.
DR HOGENOM; CLU_038841_4_1_1; -.
DR InParanoid; Q5VND6; -.
DR OMA; NSAYNDE; -.
DR OrthoDB; 1216172at2759; -.
DR Proteomes; UP000000763; Chromosome 6.
DR Proteomes; UP000007752; Chromosome 6.
DR Proteomes; UP000059680; Chromosome 6.
DR Genevisible; Q5VND6; OS.
DR GO; GO:0000785; C:chromatin; IBA:GO_Central.
DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0003682; F:chromatin binding; IBA:GO_Central.
DR GO; GO:0042393; F:histone binding; IBA:GO_Central.
DR GO; GO:0000724; P:double-strand break repair via homologous recombination; IEA:UniProt.
DR GO; GO:0006334; P:nucleosome assembly; IBA:GO_Central.
DR InterPro; IPR037231; NAP-like_sf.
DR InterPro; IPR002164; NAP_family.
DR PANTHER; PTHR11875; PTHR11875; 1.
DR Pfam; PF00956; NAP; 1.
DR SUPFAM; SSF143113; SSF143113; 1.
PE 2: Evidence at transcript level;
KW Chaperone; Coiled coil; Cytoplasm; Lipoprotein; Methylation; Nucleus;
KW Prenylation; Reference proteome.
FT CHAIN 1..375
FT /note="Nucleosome assembly protein 1;1"
FT /id="PRO_0000423685"
FT PROPEP 376..378
FT /note="Removed in mature form"
FT /evidence="ECO:0000250|UniProtKB:Q9SZI2"
FT /id="PRO_0000423686"
FT REGION 306..378
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 33..87
FT /evidence="ECO:0000255"
FT MOTIF 54..69
FT /note="Nuclear export signal"
FT /evidence="ECO:0000255"
FT MOTIF 230..235
FT /note="Nuclear localization signal"
FT /evidence="ECO:0000255"
FT MOTIF 348..352
FT /note="Nuclear localization signal"
FT /evidence="ECO:0000255"
FT COMPBIAS 309..343
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT MOD_RES 375
FT /note="Cysteine methyl ester"
FT /evidence="ECO:0000250|UniProtKB:Q9SZI2"
FT LIPID 375
FT /note="S-farnesyl cysteine"
FT /evidence="ECO:0000250|UniProtKB:Q9SZI2"
SQ SEQUENCE 378 AA; 42638 MW; 2C5DA18807B116A6 CRC64;
MGGDKENLDL SDLNASLPAA AAALSAEDRA GLVNALKDKL QSLAGQHTDV LEALSPNVRK
RVEYLREIQG QHDEIELKFF EERAALEAKY QKLYEPLYTK RYNIVNGVVE VDGGNDEPAS
ENAAEGKDAD AKGVPDFWLT AMKTNEVLSE EIQERDEPAL KYLKDIKWAR IDDPKGFKLD
FFFDTNPFFK NSVLTKTYHM VDEDEPILEK AIGTEIEWYP GKNLTQKILK KKPKKGSKNA
KPITKTEVCE SFFNFFSPPQ VPDDDEDIDE DTADELQGQM EHDYDIGTTI RDKIIPHAVS
WFTGEAVQAE DFDDMEDDEE DDEDDDEDEE EEEEDEDEDE DDEEEKSKPK KKSAGKPKLP
SKGGAQGGAD QPADCKQQ
