ID   NDX1_ORYSJ              Reviewed;         302 AA.
AC   Q0IWM5; A0A0P0XVU6; Q8LNG9;
DT   13-APR-2016, integrated into UniProtKB/Swiss-Prot.
DT   13-APR-2016, sequence version 2.
DT   03-AUG-2022, entry version 74.
DE   RecName: Full=Protein NEOXANTHIN-DEFICIENT 1 {ECO:0000305};
GN   Name=NDX1 {ECO:0000305};
GN   OrderedLocusNames=Os10g0499600 {ECO:0000312|EMBL:BAF26890.1};
GN   ORFNames=OSJNBa0078O01.15 {ECO:0000312|EMBL:AAM93694.1};
OS   Oryza sativa subsp. japonica (Rice).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC   Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX   NCBI_TaxID=39947;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=12791992; DOI=10.1126/science.1083523;
RA   Yu Y., Rambo T., Currie J., Saski C., Kim H.-R., Collura K., Thompson S.,
RA   Simmons J., Yang T.-J., Nah G., Patel A.J., Thurmond S., Henry D.,
RA   Oates R., Palmer M., Pries G., Gibson J., Anderson H., Paradkar M.,
RA   Crane L., Dale J., Carver M.B., Wood T., Frisch D., Engler F.,
RA   Soderlund C., Palmer L.E., Teytelman L., Nascimento L., De la Bastide M.,
RA   Spiegel L., Ware D., O'Shaughnessy A., Dike S., Dedhia N., Preston R.,
RA   Huang E., Ferraro K., Kuit K., Miller B., Zutavern T., Katzenberger F.,
RA   Muller S., Balija V., Martienssen R.A., Stein L., Minx P., Johnson D.,
RA   Cordum H., Mardis E., Cheng Z., Jiang J., Wilson R., McCombie W.R.,
RA   Wing R.A., Yuan Q., Ouyang S., Liu J., Jones K.M., Gansberger K.,
RA   Moffat K., Hill J., Tsitrin T., Overton L., Bera J., Kim M., Jin S.,
RA   Tallon L., Ciecko A., Pai G., Van Aken S., Utterback T., Reidmuller S.,
RA   Bormann J., Feldblyum T., Hsiao J., Zismann V., Blunt S., de Vazeille A.R.,
RA   Shaffer T., Koo H., Suh B., Yang Q., Haas B., Peterson J., Pertea M.,
RA   Volfovsky N., Wortman J., White O., Salzberg S.L., Fraser C.M., Buell C.R.,
RA   Messing J., Song R., Fuks G., Llaca V., Kovchak S., Young S., Bowers J.E.,
RA   Paterson A.H., Johns M.A., Mao L., Pan H., Dean R.A.;
RT   "In-depth view of structure, activity, and evolution of rice chromosome
RT   10.";
RL   Science 300:1566-1569(2003).
RN   [2]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=16100779; DOI=10.1038/nature03895;
RG   International rice genome sequencing project (IRGSP);
RT   "The map-based sequence of the rice genome.";
RL   Nature 436:793-800(2005).
RN   [3]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=18089549; DOI=10.1093/nar/gkm978;
RG   The rice annotation project (RAP);
RT   "The rice annotation project database (RAP-DB): 2008 update.";
RL   Nucleic Acids Res. 36:D1028-D1033(2008).
RN   [4]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA   Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA   Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA   Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA   Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT   "Improvement of the Oryza sativa Nipponbare reference genome using next
RT   generation sequence and optical map data.";
RL   Rice 6:4-4(2013).
CC   -!- FUNCTION: Required for neoxanthin biosynthesis. Probably not involved
CC       directly in the enzymatic conversion of violaxanthin to neoxanthin. Is
CC       necessary but not sufficient for neoxanthin synthesis.
CC       {ECO:0000250|UniProtKB:Q8GWB2}.
CC   -!- SEQUENCE CAUTION:
CC       Sequence=AAM93694.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC       Sequence=BAF26890.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC       Sequence=BAT11515.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR   EMBL; AC079888; AAM93694.1; ALT_SEQ; Genomic_DNA.
DR   EMBL; AP008216; BAF26890.1; ALT_SEQ; Genomic_DNA.
DR   EMBL; AP014966; BAT11515.1; ALT_SEQ; Genomic_DNA.
DR   RefSeq; XP_015612961.1; XM_015757475.1.
DR   AlphaFoldDB; Q0IWM5; -.
DR   STRING; 39947.Q0IWM5; -.
DR   PaxDb; Q0IWM5; -.
DR   PRIDE; Q0IWM5; -.
DR   GeneID; 4349027; -.
DR   KEGG; osa:4349027; -.
DR   InParanoid; Q0IWM5; -.
DR   OrthoDB; 1433550at2759; -.
DR   Proteomes; UP000000763; Chromosome 10.
DR   Proteomes; UP000059680; Chromosome 10.
DR   Gene3D; 2.40.400.10; -; 1.
DR   InterPro; IPR023375; ADC_dom_sf.
DR   InterPro; IPR039343; NDX1-like.
DR   PANTHER; PTHR35467; PTHR35467; 1.
DR   SUPFAM; SSF160104; SSF160104; 1.
PE   3: Inferred from homology;
KW   Reference proteome.
FT   CHAIN           1..302
FT                   /note="Protein NEOXANTHIN-DEFICIENT 1"
FT                   /id="PRO_0000435896"
SQ   SEQUENCE   302 AA;  33178 MW;  F82AE2162EADF39D CRC64;
     MAAGSGREEA AAAAGYGRGP PWVFRGRALY QLHLVKAATA RAFVPRELRL VEAFGYTLGG
     MFLARYDDSP AGKFDELVVI AGIVWNPPTS CAWAARVLVN SAEACRHGRK EVGLPSHVAT
     FSQTEADALR NKPLVKSNSF LSLLGMRSTV SNQGNDREIE ISETKGSCTR HLCNISVPLT
     GSHKHKWMGP AIRMSLPSFS GQIEDHPDLL KYSCQVECRV RPVRPAKIWR PRITEPQECP
     DGKISSKGSE VLAEPDAQKH TVMVLLSKPI LALEFNSLEM HVDAPKIVIP HSKKKEVRYS
     ST