NFYB4_ORYSJ
ID NFYB4_ORYSJ Reviewed; 143 AA.
AC Q65XK1; Q0DFS6; Q84NE9;
DT 30-AUG-2005, integrated into UniProtKB/Swiss-Prot.
DT 30-AUG-2005, sequence version 2.
DT 03-AUG-2022, entry version 110.
DE RecName: Full=Nuclear transcription factor Y subunit B-4;
DE AltName: Full=OsNF-YB-4;
DE AltName: Full=Transcriptional activator HAP3C;
GN Name=NFYB4; Synonyms=HAP3C; OrderedLocusNames=Os05g0573500, LOC_Os05g49780;
GN ORFNames=OJ1735_C10.17;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA], FUNCTION, AND TISSUE SPECIFICITY.
RC STRAIN=cv. Nipponbare;
RX PubMed=14617083; DOI=10.1046/j.1365-313x.2003.01897.x;
RA Miyoshi K., Ito Y., Serizawa A., Kurata N.;
RT "OsHAP3 genes regulate chloroplast biogenesis in rice.";
RL Plant J. 36:532-540(2003).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16261349; DOI=10.1007/s00438-005-0039-y;
RA Cheng C.-H., Chung M.C., Liu S.-M., Chen S.-K., Kao F.Y., Lin S.-J.,
RA Hsiao S.-H., Tseng I.C., Hsing Y.-I.C., Wu H.-P., Chen C.-S., Shaw J.-F.,
RA Wu J., Matsumoto T., Sasaki T., Chen H.-C., Chow T.-Y.;
RT "A fine physical map of the rice chromosome 5.";
RL Mol. Genet. Genomics 274:337-345(2005).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [5]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
CC -!- FUNCTION: Component of the NF-Y/HAP transcription factor complex. The
CC NF-Y complex stimulates the transcription of various genes by
CC recognizing and binding to a CCAAT motif in promoters. May regulate the
CC expression of photosynthetic genes, and may be involved in chloroplast
CC and amyloplast development. {ECO:0000269|PubMed:14617083}.
CC -!- SUBUNIT: Heterotrimeric transcription factor composed of three
CC components, NF-YA, NF-YB and NF-YC. NF-YB and NF-YC must interact and
CC dimerize for NF-YA association and DNA binding (By similarity).
CC {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
CC -!- TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:14617083}.
CC -!- SIMILARITY: Belongs to the NFYB/HAP3 subunit family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAU44106.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AB095440; BAC76333.1; -; mRNA.
DR EMBL; AC104284; AAU44106.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AP008211; BAF18297.1; -; Genomic_DNA.
DR EMBL; AP014961; BAS95449.1; -; Genomic_DNA.
DR RefSeq; XP_015638071.1; XM_015782585.1.
DR AlphaFoldDB; Q65XK1; -.
DR SMR; Q65XK1; -.
DR STRING; 4530.OS05T0573500-00; -.
DR PaxDb; Q65XK1; -.
DR PRIDE; Q65XK1; -.
DR EnsemblPlants; Os05t0573500-01; Os05t0573500-01; Os05g0573500.
DR GeneID; 4339676; -.
DR Gramene; Os05t0573500-01; Os05t0573500-01; Os05g0573500.
DR KEGG; osa:4339676; -.
DR eggNOG; KOG0869; Eukaryota.
DR HOGENOM; CLU_066247_13_1_1; -.
DR InParanoid; Q65XK1; -.
DR OMA; KSGMGDP; -.
DR OrthoDB; 1529111at2759; -.
DR Proteomes; UP000000763; Chromosome 5.
DR Proteomes; UP000059680; Chromosome 5.
DR Genevisible; Q65XK1; OS.
DR GO; GO:0016602; C:CCAAT-binding factor complex; IBA:GO_Central.
DR GO; GO:0001228; F:DNA-binding transcription activator activity, RNA polymerase II-specific; IEA:InterPro.
DR GO; GO:0000981; F:DNA-binding transcription factor activity, RNA polymerase II-specific; IBA:GO_Central.
DR GO; GO:0046982; F:protein heterodimerization activity; IEA:InterPro.
DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.
DR GO; GO:0006357; P:regulation of transcription by RNA polymerase II; IBA:GO_Central.
DR Gene3D; 1.10.20.10; -; 1.
DR InterPro; IPR003958; CBFA_NFYB_domain.
DR InterPro; IPR009072; Histone-fold.
DR InterPro; IPR027113; Transc_fact_NFYB/HAP3.
DR InterPro; IPR003956; Transcrpt_fac_NFYB/HAP3_CS.
DR PANTHER; PTHR11064; PTHR11064; 1.
DR Pfam; PF00808; CBFD_NFYB_HMF; 1.
DR SUPFAM; SSF47113; SSF47113; 1.
DR PROSITE; PS00685; NFYB_HAP3; 1.
PE 2: Evidence at transcript level;
KW Activator; DNA-binding; Nucleus; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..143
FT /note="Nuclear transcription factor Y subunit B-4"
FT /id="PRO_0000204629"
FT DNA_BIND 27..33
FT /evidence="ECO:0000250"
FT REGION 1..23
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 54..65
FT /note="Subunit association domain (SAD)"
FT /evidence="ECO:0000250"
FT REGION 117..143
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CONFLICT 112..113
FT /note="Missing (in Ref. 2)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 143 AA; 15530 MW; FE00766CE02BA00F CRC64;
MSEGFDGTEN GGGGGGGGVG KEQDRFLPIA NIGRIMRRAV PENGKIAKDS KESVQECVSE
FISFITSEAS DKCLKEKRKT INGDDLIWSM GTLGFEDYVE PLKLYLRLYR ETEGDTKGSR
ASELPVKKDV VLNGDPGSSF EGM
