NFYB8_ORYSJ
ID NFYB8_ORYSJ Reviewed; 219 AA.
AC Q75IZ7;
DT 05-OCT-2016, integrated into UniProtKB/Swiss-Prot.
DT 05-JUL-2004, sequence version 1.
DT 03-AUG-2022, entry version 145.
DE RecName: Full=Nuclear transcription factor Y subunit B-8 {ECO:0000305};
DE Short=OsNF-YB8 {ECO:0000303|PubMed:26542958};
DE AltName: Full=Transcriptional activator HAP3I {ECO:0000305};
DE Short=OsHAP3I {ECO:0000303|PubMed:18193457};
GN Name=NFYB8 {ECO:0000305}; Synonyms=HAP3I {ECO:0000303|PubMed:18193457};
GN OrderedLocusNames=Os03g0413000 {ECO:0000312|EMBL:BAF12272.1},
GN LOC_Os03g29970 {ECO:0000312|EMBL:ABF96585.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=18193457; DOI=10.1007/s00438-007-0312-3;
RA Thirumurugan T., Ito Y., Kubo T., Serizawa A., Kurata N.;
RT "Identification, characterization and interaction of HAP family genes in
RT rice.";
RL Mol. Genet. Genomics 279:279-289(2008).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16109971; DOI=10.1101/gr.3869505;
RG The rice chromosome 3 sequencing consortium;
RA Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B.,
RA Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T.,
RA Fadrosh D., Bera J., Weaver B., Jin S., Johri S., Reardon M., Webb K.,
RA Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T.,
RA Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R.,
RA Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., Rambo T., Currie J.,
RA Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S.S.,
RA Luo M., Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M.,
RA Pries G., Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M.,
RA Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L.,
RA O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R.,
RA Jin W., Lee H.R., Jiang J., Jackson S.;
RT "Sequence, annotation, and analysis of synteny between rice chromosome 3
RT and diverged grass species.";
RL Genome Res. 15:1284-1291(2005).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [5]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [7]
RP INTERACTION WITH NFYC2; NFYC4 AND NFYC6, AND SUBCELLULAR LOCATION.
RX PubMed=26542958; DOI=10.1007/s00425-015-2426-x;
RA Kim S.K., Park H.Y., Jang Y.H., Lee K.C., Chung Y.S., Lee J.H., Kim J.K.;
RT "OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions
RT in rice.";
RL Planta 243:563-576(2016).
CC -!- FUNCTION: Component of the NF-Y/HAP transcription factor complex.
CC {ECO:0000250}.
CC -!- SUBUNIT: Heterotrimeric transcription factor composed of three
CC components, NF-YA, NF-YB and NF-YC. NF-YB and NF-YC must interact and
CC dimerize for NF-YA association and DNA binding (By similarity).
CC Interacts with NFYC2, NFYC4 and NFYC6 (PubMed:26542958). {ECO:0000250,
CC ECO:0000269|PubMed:26542958}.
CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000269|PubMed:26542958}.
CC -!- SIMILARITY: Belongs to the NFYB/HAP3 subunit family. {ECO:0000305}.
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DR EMBL; AB288040; BAF64448.1; -; Genomic_DNA.
DR EMBL; AC120529; AAS07059.1; -; Genomic_DNA.
DR EMBL; DP000009; ABF96585.1; -; Genomic_DNA.
DR EMBL; AP008209; BAF12272.1; -; Genomic_DNA.
DR EMBL; AP014959; BAS84677.1; -; Genomic_DNA.
DR EMBL; AK060225; BAG87374.1; -; mRNA.
DR RefSeq; XP_015631006.1; XM_015775520.1.
DR AlphaFoldDB; Q75IZ7; -.
DR SMR; Q75IZ7; -.
DR STRING; 4530.OS03T0413000-01; -.
DR PaxDb; Q75IZ7; -.
DR PRIDE; Q75IZ7; -.
DR EnsemblPlants; Os03t0413000-01; Os03t0413000-01; Os03g0413000.
DR GeneID; 4333105; -.
DR Gramene; Os03t0413000-01; Os03t0413000-01; Os03g0413000.
DR KEGG; osa:4333105; -.
DR eggNOG; KOG0869; Eukaryota.
DR HOGENOM; CLU_066247_1_0_1; -.
DR InParanoid; Q75IZ7; -.
DR OMA; QHHMAMG; -.
DR OrthoDB; 1529111at2759; -.
DR Proteomes; UP000000763; Chromosome 3.
DR Proteomes; UP000059680; Chromosome 3.
DR GO; GO:0016602; C:CCAAT-binding factor complex; IBA:GO_Central.
DR GO; GO:0005737; C:cytoplasm; IDA:UniProtKB.
DR GO; GO:0001228; F:DNA-binding transcription activator activity, RNA polymerase II-specific; IEA:InterPro.
DR GO; GO:0000981; F:DNA-binding transcription factor activity, RNA polymerase II-specific; IBA:GO_Central.
DR GO; GO:0046982; F:protein heterodimerization activity; IEA:InterPro.
DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.
DR GO; GO:0006357; P:regulation of transcription by RNA polymerase II; IBA:GO_Central.
DR Gene3D; 1.10.20.10; -; 1.
DR InterPro; IPR003958; CBFA_NFYB_domain.
DR InterPro; IPR009072; Histone-fold.
DR InterPro; IPR027113; Transc_fact_NFYB/HAP3.
DR InterPro; IPR003956; Transcrpt_fac_NFYB/HAP3_CS.
DR PANTHER; PTHR11064; PTHR11064; 1.
DR Pfam; PF00808; CBFD_NFYB_HMF; 1.
DR SUPFAM; SSF47113; SSF47113; 1.
DR PROSITE; PS00685; NFYB_HAP3; 1.
PE 1: Evidence at protein level;
KW Cytoplasm; DNA-binding; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..219
FT /note="Nuclear transcription factor Y subunit B-8"
FT /id="PRO_0000437432"
FT DNA_BIND 29..35
FT /evidence="ECO:0000250"
FT REGION 1..26
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 56..67
FT /note="Subunit association domain (SAD)"
FT /evidence="ECO:0000250"
FT REGION 119..142
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 166..219
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1..19
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 122..142
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 203..219
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 219 AA; 22986 MW; 704BD8B700C5F2C0 CRC64;
MPDSDNDSGG PSNYAGGELS SPREQDRFLP IANVSRIMKK ALPANAKISK DAKETVQECV
SEFISFITGE ASDKCQREKR KTINGDDLLW AMTTLGFEDY VDPLKHYLHK FREIEGERAA
ASTTGAGTSA ASTTPPQQQH TANAAGGYAG YAAPGAGPGG MMMMMGQPMY GSPPPPPQQQ
QQQHHHMAMG GRGGFGHHPG GGGGGSSSSS GHGRQNRGA
