NFYBA_ORYSJ
ID NFYBA_ORYSJ Reviewed; 224 AA.
AC Q69J40;
DT 05-OCT-2016, integrated into UniProtKB/Swiss-Prot.
DT 13-SEP-2004, sequence version 1.
DT 03-AUG-2022, entry version 144.
DE RecName: Full=Nuclear transcription factor Y subunit B-10 {ECO:0000305};
DE Short=OsNF-YB10 {ECO:0000303|PubMed:26542958};
DE AltName: Full=Transcriptional activator HAP3F {ECO:0000305};
DE Short=OsHAP3F {ECO:0000303|PubMed:18193457};
GN Name=NFYB10 {ECO:0000305}; Synonyms=HAP3F {ECO:0000303|PubMed:18193457};
GN OrderedLocusNames=Os07g0606600 {ECO:0000312|EMBL:BAF22144.1},
GN LOC_Os07g41580 {ECO:0000305};
GN ORFNames=OSJNBa0072I06.11 {ECO:0000312|EMBL:BAD32022.1},
GN P0493C06.26 {ECO:0000312|EMBL:BAD31143.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=18193457; DOI=10.1007/s00438-007-0312-3;
RA Thirumurugan T., Ito Y., Kubo T., Serizawa A., Kurata N.;
RT "Identification, characterization and interaction of HAP family genes in
RT rice.";
RL Mol. Genet. Genomics 279:279-289(2008).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [6]
RP INTERACTION WITH NFYC2; NFYC4 AND NFYC6, AND SUBCELLULAR LOCATION.
RX PubMed=26542958; DOI=10.1007/s00425-015-2426-x;
RA Kim S.K., Park H.Y., Jang Y.H., Lee K.C., Chung Y.S., Lee J.H., Kim J.K.;
RT "OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions
RT in rice.";
RL Planta 243:563-576(2016).
CC -!- FUNCTION: Component of the NF-Y/HAP transcription factor complex.
CC {ECO:0000250}.
CC -!- SUBUNIT: Heterotrimeric transcription factor composed of three
CC components, NF-YA, NF-YB and NF-YC. NF-YB and NF-YC must interact and
CC dimerize for NF-YA association and DNA binding (By similarity).
CC Interacts with NFYC2, NFYC4 and NFYC6 (PubMed:26542958). {ECO:0000250,
CC ECO:0000269|PubMed:26542958}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000269|PubMed:26542958}.
CC -!- SIMILARITY: Belongs to the NFYB/HAP3 subunit family. {ECO:0000305}.
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DR EMBL; AB288037; BAF64445.1; -; Genomic_DNA.
DR EMBL; AP005193; BAD31143.1; -; Genomic_DNA.
DR EMBL; AP006458; BAD32022.1; -; Genomic_DNA.
DR EMBL; AP008213; BAF22144.1; -; Genomic_DNA.
DR EMBL; AP014963; BAT02572.1; -; Genomic_DNA.
DR EMBL; AK111621; BAG99337.1; -; mRNA.
DR EMBL; AK112118; BAG99555.1; -; mRNA.
DR RefSeq; XP_015645521.1; XM_015790035.1.
DR AlphaFoldDB; Q69J40; -.
DR SMR; Q69J40; -.
DR STRING; 4530.OS07T0606600-01; -.
DR PaxDb; Q69J40; -.
DR PRIDE; Q69J40; -.
DR EnsemblPlants; Os07t0606600-01; Os07t0606600-01; Os07g0606600.
DR GeneID; 4343856; -.
DR Gramene; Os07t0606600-01; Os07t0606600-01; Os07g0606600.
DR KEGG; osa:4343856; -.
DR eggNOG; KOG0869; Eukaryota.
DR HOGENOM; CLU_066247_1_0_1; -.
DR InParanoid; Q69J40; -.
DR OMA; NECVSEF; -.
DR OrthoDB; 1529111at2759; -.
DR Proteomes; UP000000763; Chromosome 7.
DR Proteomes; UP000059680; Chromosome 7.
DR GO; GO:0016602; C:CCAAT-binding factor complex; IBA:GO_Central.
DR GO; GO:0005634; C:nucleus; IDA:UniProtKB.
DR GO; GO:0001228; F:DNA-binding transcription activator activity, RNA polymerase II-specific; IEA:InterPro.
DR GO; GO:0000981; F:DNA-binding transcription factor activity, RNA polymerase II-specific; IBA:GO_Central.
DR GO; GO:0046982; F:protein heterodimerization activity; IEA:InterPro.
DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.
DR GO; GO:0006357; P:regulation of transcription by RNA polymerase II; IBA:GO_Central.
DR Gene3D; 1.10.20.10; -; 1.
DR InterPro; IPR003958; CBFA_NFYB_domain.
DR InterPro; IPR009072; Histone-fold.
DR InterPro; IPR027113; Transc_fact_NFYB/HAP3.
DR InterPro; IPR003956; Transcrpt_fac_NFYB/HAP3_CS.
DR PANTHER; PTHR11064; PTHR11064; 1.
DR Pfam; PF00808; CBFD_NFYB_HMF; 1.
DR SUPFAM; SSF47113; SSF47113; 1.
DR PROSITE; PS00685; NFYB_HAP3; 1.
PE 1: Evidence at protein level;
KW DNA-binding; Nucleus; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..224
FT /note="Nuclear transcription factor Y subunit B-10"
FT /id="PRO_0000437433"
FT DNA_BIND 27..33
FT /evidence="ECO:0000250"
FT REGION 1..22
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 54..65
FT /note="Subunit association domain (SAD)"
FT /evidence="ECO:0000250"
FT REGION 121..152
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 173..224
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 129..147
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 224 AA; 23273 MW; D2E32DC64D138EBF CRC64;
MPDSDNESGG PSNAGEYASA REQDRFLPIA NVSRIMKRAL PANAKISKDA KETVQECVSE
FISFITGEAS DKCQREKRKT INGDDLLWAM TTLGFEDYID PLKLYLHKFR ELEGEKAIGA
AGSGGGGAAS SGGSGSGSGS HHHQDASRNN GGYGMYGGGG GMIMMMGQPM YGSPPASSAG
YAQPPPPHHH HHQMVMGGKG AYGHGGGGGG GPSPSSGYGR QDRL
