NFYB_CHICK
ID NFYB_CHICK Reviewed; 205 AA.
AC P25207; Q5ZL45;
DT 01-MAY-1992, integrated into UniProtKB/Swiss-Prot.
DT 30-AUG-2005, sequence version 2.
DT 03-AUG-2022, entry version 142.
DE RecName: Full=Nuclear transcription factor Y subunit beta;
DE AltName: Full=CAAT box DNA-binding protein subunit B;
DE AltName: Full=Nuclear transcription factor Y subunit B;
DE Short=NF-YB;
GN Name=NFYB; ORFNames=RCJMB04_7n24;
OS Gallus gallus (Chicken).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
OC Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae;
OC Phasianinae; Gallus.
OX NCBI_TaxID=9031;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=CB; TISSUE=Bursa of Fabricius;
RX PubMed=15642098; DOI=10.1186/gb-2004-6-1-r6;
RA Caldwell R.B., Kierzek A.M., Arakawa H., Bezzubov Y., Zaim J., Fiedler P.,
RA Kutter S., Blagodatski A., Kostovska D., Koter M., Plachy J., Carninci P.,
RA Hayashizaki Y., Buerstedde J.-M.;
RT "Full-length cDNAs from chicken bursal lymphocytes to facilitate gene
RT function analysis.";
RL Genome Biol. 6:R6.1-R6.9(2005).
RN [2]
RP NUCLEOTIDE SEQUENCE [MRNA] OF 1-151.
RX PubMed=1549471; DOI=10.1093/nar/20.5.1087;
RA Li X.-Y., Mantovani R., Hooft van Huijsduijnen R., Andre I., Benoist C.,
RA Mathis D.;
RT "Evolutionary variation of the CCAAT-binding transcription factor NF-Y.";
RL Nucleic Acids Res. 20:1087-1091(1992).
CC -!- FUNCTION: Component of the sequence-specific heterotrimeric
CC transcription factor (NF-Y) which specifically recognizes a 5'-CCAAT-3'
CC box motif found in the promoters of its target genes. NF-Y can function
CC as both an activator and a repressor, depending on its interacting
CC cofactors.
CC -!- SUBUNIT: Heterotrimeric transcription factor composed of three
CC components, NF-YA, NF-YB and NF-YC. NF-YB and NF-YC must interact and
CC dimerize for NF-YA association and DNA binding (By similarity).
CC {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Nucleus.
CC -!- DOMAIN: Can be divided into 3 domains: the weakly conserved A domain,
CC the highly conserved B domain thought to be involved in subunit
CC interaction and DNA binding, and the Glu-rich C domain.
CC -!- SIMILARITY: Belongs to the NFYB/HAP3 subunit family. {ECO:0000305}.
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; AJ719889; CAG31548.1; -; mRNA.
DR EMBL; X59713; CAA42233.1; ALT_SEQ; mRNA.
DR PIR; S24469; S24469.
DR RefSeq; NP_990600.1; NM_205269.1.
DR AlphaFoldDB; P25207; -.
DR SMR; P25207; -.
DR STRING; 9031.ENSGALP00000020733; -.
DR PaxDb; P25207; -.
DR Ensembl; ENSGALT00000054743; ENSGALP00000057619; ENSGALG00000041193.
DR Ensembl; ENSGALT00000065187; ENSGALP00000051245; ENSGALG00000041193.
DR Ensembl; ENSGALT00000067128; ENSGALP00000050636; ENSGALG00000041193.
DR Ensembl; ENSGALT00000070018; ENSGALP00000056991; ENSGALG00000041193.
DR Ensembl; ENSGALT00000101106; ENSGALP00000072563; ENSGALG00000041193.
DR GeneID; 396205; -.
DR KEGG; gga:396205; -.
DR CTD; 4801; -.
DR VEuPathDB; HostDB:geneid_396205; -.
DR eggNOG; KOG0869; Eukaryota.
DR GeneTree; ENSGT00940000154917; -.
DR HOGENOM; CLU_066247_9_2_1; -.
DR InParanoid; P25207; -.
DR OMA; PRWDWFL; -.
DR OrthoDB; 1529111at2759; -.
DR PhylomeDB; P25207; -.
DR TreeFam; TF314521; -.
DR PRO; PR:P25207; -.
DR Proteomes; UP000000539; Chromosome 1.
DR Bgee; ENSGALG00000041193; Expressed in spermatocyte and 12 other tissues.
DR ExpressionAtlas; P25207; baseline and differential.
DR GO; GO:0016602; C:CCAAT-binding factor complex; IBA:GO_Central.
DR GO; GO:0001228; F:DNA-binding transcription activator activity, RNA polymerase II-specific; IEA:InterPro.
DR GO; GO:0000981; F:DNA-binding transcription factor activity, RNA polymerase II-specific; IBA:GO_Central.
DR GO; GO:0046982; F:protein heterodimerization activity; IEA:InterPro.
DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.
DR GO; GO:0006357; P:regulation of transcription by RNA polymerase II; IBA:GO_Central.
DR Gene3D; 1.10.20.10; -; 1.
DR InterPro; IPR003958; CBFA_NFYB_domain.
DR InterPro; IPR009072; Histone-fold.
DR InterPro; IPR027113; Transc_fact_NFYB/HAP3.
DR InterPro; IPR003956; Transcrpt_fac_NFYB/HAP3_CS.
DR PANTHER; PTHR11064; PTHR11064; 1.
DR Pfam; PF00808; CBFD_NFYB_HMF; 1.
DR SUPFAM; SSF47113; SSF47113; 1.
DR PROSITE; PS00685; NFYB_HAP3; 1.
PE 2: Evidence at transcript level;
KW Activator; DNA-binding; Nucleus; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..205
FT /note="Nuclear transcription factor Y subunit beta"
FT /id="PRO_0000204612"
FT DNA_BIND 57..63
FT /evidence="ECO:0000250"
FT REGION 1..50
FT /note="A domain"
FT REGION 24..50
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 51..140
FT /note="B domain"
FT REGION 84..95
FT /note="Subunit association domain (SAD)"
FT /evidence="ECO:0000250"
FT REGION 141..201
FT /note="C domain"
FT COMPBIAS 28..49
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 205 AA; 22585 MW; C68BEBBE27049AD2 CRC64;
MDGDSSTTDA SQLGIAGDYI GGSHYVIQPH DDTEDSMNDH EDTNGSKESF REQDIYLPIA
NVARIMKNAI PQTGKIAKDA KECVQECVSE FISFITSEAS ERCHQEKRKT INGEDILFAM
STLGFDSYVE PLKLYLQKFR EAMKGEKGIG GTVTTGDGLS EELTEEAFTN QLPAGLITTD
GQQQNVMVYT TSYQQISGVQ QIQFS