NFYC4_ORYSJ
ID NFYC4_ORYSJ Reviewed; 250 AA.
AC Q655V5;
DT 05-OCT-2016, integrated into UniProtKB/Swiss-Prot.
DT 25-OCT-2004, sequence version 1.
DT 03-AUG-2022, entry version 137.
DE RecName: Full=Nuclear transcription factor Y subunit C-4 {ECO:0000305};
DE Short=OsNF-YC4 {ECO:0000303|PubMed:26542958};
DE AltName: Full=Transcriptional activator HAP5B {ECO:0000305};
DE Short=OsHAP5B {ECO:0000303|PubMed:18193457};
GN Name=NFYC4 {ECO:0000305}; Synonyms=HAP5B {ECO:0000303|PubMed:18193457};
GN OrderedLocusNames=Os06g0667100 {ECO:0000312|EMBL:BAF20226.1},
GN LOC_Os06g45640 {ECO:0000305};
GN ORFNames=OsJ_22293 {ECO:0000312|EMBL:EAZ37943.1},
GN P0637D03.35 {ECO:0000312|EMBL:BAD45412.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA], AND INTERACTION WITH NFYB2.
RC STRAIN=cv. Nipponbare;
RX PubMed=18193457; DOI=10.1007/s00438-007-0312-3;
RA Thirumurugan T., Ito Y., Kubo T., Serizawa A., Kurata N.;
RT "Identification, characterization and interaction of HAP family genes in
RT rice.";
RL Mol. Genet. Genomics 279:279-289(2008).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [7]
RP FUNCTION, INTERACTION WITH NFYB8; NFYB10 AND HD5/NFYB11, SUBCELLULAR
RP LOCATION, AND INDUCTION.
RX PubMed=26542958; DOI=10.1007/s00425-015-2426-x;
RA Kim S.K., Park H.Y., Jang Y.H., Lee K.C., Chung Y.S., Lee J.H., Kim J.K.;
RT "OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions
RT in rice.";
RL Planta 243:563-576(2016).
CC -!- FUNCTION: Probable transcription factor involved in the regulation of
CC flowering time under long day (LD) conditions. Functions as repressor
CC of flowering, independently of HD1 and GHD7. Controls flowering time by
CC negatively regulating the expression of EHD1 and HD3A
CC (PubMed:26542958). Component of the NF-Y/HAP transcription factor
CC complex (By similarity). {ECO:0000250, ECO:0000269|PubMed:26542958}.
CC -!- SUBUNIT: Heterotrimeric transcription factor composed of three
CC components, NF-YA, NF-YB and NF-YC. NF-YB and NF-YC must interact and
CC dimerize for NF-YA association and DNA binding (By similarity).
CC Interacts with NFYB2 (PubMed:18193457). Interacts with NFYB8, NFYB10
CC and HD5/NFYB11 (PubMed:26542958). {ECO:0000250,
CC ECO:0000269|PubMed:18193457, ECO:0000269|PubMed:26542958}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000269|PubMed:26542958}. Cytoplasm
CC {ECO:0000269|PubMed:26542958}.
CC -!- INDUCTION: Circadian-regulation under long day (LD) conditions.
CC Expression increases in the middle of daytime, peaks around the end of
CC the light period and gradually decreases during the dark period and
CC beginning of daylight. {ECO:0000269|PubMed:26542958}.
CC -!- SIMILARITY: Belongs to the NFYC/HAP5 subunit family. {ECO:0000305}.
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; AB288042; BAF64450.1; -; Genomic_DNA.
DR EMBL; AP003633; BAD45412.1; -; Genomic_DNA.
DR EMBL; AP008212; BAF20226.1; -; Genomic_DNA.
DR EMBL; AP014962; BAS99044.1; -; Genomic_DNA.
DR EMBL; CM000143; EAZ37943.1; -; Genomic_DNA.
DR EMBL; AK066630; BAG90057.1; -; mRNA.
DR RefSeq; XP_015644345.1; XM_015788859.1.
DR AlphaFoldDB; Q655V5; -.
DR SMR; Q655V5; -.
DR STRING; 4530.OS06T0667100-01; -.
DR PaxDb; Q655V5; -.
DR PRIDE; Q655V5; -.
DR EnsemblPlants; Os06t0667100-01; Os06t0667100-01; Os06g0667100.
DR GeneID; 4341785; -.
DR Gramene; Os06t0667100-01; Os06t0667100-01; Os06g0667100.
DR KEGG; osa:4341785; -.
DR eggNOG; KOG1657; Eukaryota.
DR HOGENOM; CLU_045277_0_0_1; -.
DR InParanoid; Q655V5; -.
DR OMA; FEQETEM; -.
DR OrthoDB; 1558176at2759; -.
DR Proteomes; UP000000763; Chromosome 6.
DR Proteomes; UP000007752; Chromosome 6.
DR Proteomes; UP000059680; Chromosome 6.
DR GO; GO:0005737; C:cytoplasm; IDA:UniProtKB.
DR GO; GO:0005634; C:nucleus; IDA:UniProtKB.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0001228; F:DNA-binding transcription activator activity, RNA polymerase II-specific; IBA:GO_Central.
DR GO; GO:0046982; F:protein heterodimerization activity; IEA:InterPro.
DR GO; GO:0009908; P:flower development; IEA:UniProtKB-KW.
DR GO; GO:0048579; P:negative regulation of long-day photoperiodism, flowering; IMP:UniProtKB.
DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IBA:GO_Central.
DR Gene3D; 1.10.20.10; -; 1.
DR InterPro; IPR003958; CBFA_NFYB_domain.
DR InterPro; IPR009072; Histone-fold.
DR Pfam; PF00808; CBFD_NFYB_HMF; 1.
DR SUPFAM; SSF47113; SSF47113; 1.
PE 1: Evidence at protein level;
KW Cytoplasm; DNA-binding; Flowering; Nucleus; Reference proteome;
KW Transcription; Transcription regulation.
FT CHAIN 1..250
FT /note="Nuclear transcription factor Y subunit C-4"
FT /id="PRO_0000437435"
FT REGION 219..250
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 250 AA; 27837 MW; 47446F8C2F9C225F CRC64;
MEPSSQPQPA IGVVAGGSQV YPAYRPAATV PTAPAVIPAG SQPAPSFPAN PDQLSAQHQL
VYQQAQQFHQ QLQQQQQRQL QQFWAERLVD IEQTTDFKNH SLPLARIKKI MKADEDVRMI
SAEAPVIFAK ACEIFILELT LRSWMHTEEN KRRTLQKNDI AAAITRTDMY DFLVDIVPRD
DLKEEGVGLP RAGLPPLGVP ADSYPYGYYV PQQQVPGAGI AYGGQQGHPG YLWQDPQEQQ
EEPPAEQQSD
