NFYC6_ORYSJ
ID NFYC6_ORYSJ Reviewed; 205 AA.
AC Q9XE33;
DT 05-OCT-2016, integrated into UniProtKB/Swiss-Prot.
DT 01-NOV-1999, sequence version 1.
DT 03-AUG-2022, entry version 155.
DE RecName: Full=Nuclear transcription factor Y subunit C-6 {ECO:0000305};
DE Short=OsNF-YC6 {ECO:0000303|PubMed:26542958};
DE AltName: Full=Transcriptional activator HAP5D {ECO:0000305};
DE Short=OsHAP5D {ECO:0000303|PubMed:18193457};
GN Name=NFYC6 {ECO:0000305}; Synonyms=HAP5D {ECO:0000303|PubMed:18193457};
GN OrderedLocusNames=Os08g0496500 {ECO:0000312|EMBL:BAF24050.1},
GN LOC_Os08g38780 {ECO:0000305};
GN ORFNames=B1142B04.32 {ECO:0000312|EMBL:BAD10129.1},
GN P0026F07.3 {ECO:0000312|EMBL:BAA81759.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA], AND INTERACTION WITH NFYB2.
RC STRAIN=cv. Nipponbare;
RX PubMed=18193457; DOI=10.1007/s00438-007-0312-3;
RA Thirumurugan T., Ito Y., Kubo T., Serizawa A., Kurata N.;
RT "Identification, characterization and interaction of HAP family genes in
RT rice.";
RL Mol. Genet. Genomics 279:279-289(2008).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [6]
RP INTERACTION WITH NFYB8; NFYB10 AND HD5/NFYB11, AND SUBCELLULAR LOCATION.
RX PubMed=26542958; DOI=10.1007/s00425-015-2426-x;
RA Kim S.K., Park H.Y., Jang Y.H., Lee K.C., Chung Y.S., Lee J.H., Kim J.K.;
RT "OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions
RT in rice.";
RL Planta 243:563-576(2016).
CC -!- FUNCTION: Component of the NF-Y/HAP transcription factor complex.
CC {ECO:0000250}.
CC -!- SUBUNIT: Heterotrimeric transcription factor composed of three
CC components, NF-YA, NF-YB and NF-YC. NF-YB and NF-YC must interact and
CC dimerize for NF-YA association and DNA binding (By similarity).
CC Interacts with NFYB2 (PubMed:18193457). Interacts with NFYB8, NFYB10
CC and HD5/NFYB11 (PubMed:26542958). {ECO:0000250,
CC ECO:0000269|PubMed:18193457, ECO:0000269|PubMed:26542958}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000269|PubMed:26542958}. Cytoplasm
CC {ECO:0000269|PubMed:26542958}.
CC -!- SIMILARITY: Belongs to the NFYC/HAP5 subunit family. {ECO:0000305}.
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; AB288044; BAF64452.1; -; Genomic_DNA.
DR EMBL; AP000364; BAA81759.1; -; Genomic_DNA.
DR EMBL; AP005148; BAD10129.1; -; Genomic_DNA.
DR EMBL; AP008214; BAF24050.1; -; Genomic_DNA.
DR EMBL; AP014964; BAT06066.1; -; Genomic_DNA.
DR EMBL; AK108510; BAG98424.1; -; mRNA.
DR RefSeq; XP_015648381.1; XM_015792895.1.
DR PDB; 6R0L; X-ray; 2.70 A; B=92-168.
DR PDBsum; 6R0L; -.
DR AlphaFoldDB; Q9XE33; -.
DR SMR; Q9XE33; -.
DR STRING; 4530.OS08T0496500-01; -.
DR PaxDb; Q9XE33; -.
DR PRIDE; Q9XE33; -.
DR EnsemblPlants; Os08t0496500-01; Os08t0496500-01; Os08g0496500.
DR GeneID; 4345928; -.
DR Gramene; Os08t0496500-01; Os08t0496500-01; Os08g0496500.
DR KEGG; osa:4345928; -.
DR eggNOG; KOG1657; Eukaryota.
DR HOGENOM; CLU_045277_5_4_1; -.
DR InParanoid; Q9XE33; -.
DR OrthoDB; 1558176at2759; -.
DR Proteomes; UP000000763; Chromosome 8.
DR Proteomes; UP000059680; Chromosome 8.
DR GO; GO:0005737; C:cytoplasm; IDA:UniProtKB.
DR GO; GO:0005634; C:nucleus; IDA:UniProtKB.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0001228; F:DNA-binding transcription activator activity, RNA polymerase II-specific; IBA:GO_Central.
DR GO; GO:0046982; F:protein heterodimerization activity; IEA:InterPro.
DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IBA:GO_Central.
DR Gene3D; 1.10.20.10; -; 1.
DR InterPro; IPR003958; CBFA_NFYB_domain.
DR InterPro; IPR009072; Histone-fold.
DR Pfam; PF00808; CBFD_NFYB_HMF; 1.
DR SUPFAM; SSF47113; SSF47113; 1.
PE 1: Evidence at protein level;
KW 3D-structure; Cytoplasm; DNA-binding; Nucleus; Reference proteome;
KW Transcription; Transcription regulation.
FT CHAIN 1..205
FT /note="Nuclear transcription factor Y subunit C-6"
FT /id="PRO_0000437436"
FT REGION 1..24
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT HELIX 93..102
FT /evidence="ECO:0007829|PDB:6R0L"
FT STRAND 107..109
FT /evidence="ECO:0007829|PDB:6R0L"
FT HELIX 112..138
FT /evidence="ECO:0007829|PDB:6R0L"
FT HELIX 146..155
FT /evidence="ECO:0007829|PDB:6R0L"
FT HELIX 157..162
FT /evidence="ECO:0007829|PDB:6R0L"
FT TURN 163..165
FT /evidence="ECO:0007829|PDB:6R0L"
SQ SEQUENCE 205 AA; 21909 MW; F747D35F886B59C8 CRC64;
MEPKSTTPPP PPPPPVLGAP VPYPPAGAYP PPVGPYAHAP PLYAPPPPAA AAASAAATAA
SQQAAAAQLQ NFWAEQYREI EHTTDFKNHN LPLARIKKIM KADEDVRMIA AEAPVVFARA
CEMFILELTH RGWAHAEENK RRTLQKSDIA AAIARTEVFD FLVDIVPRDE AKDAEAAAAV
AAGIPHPAAG LPATDPMAYY YVQPQ
