NFYCA_ARATH
ID NFYCA_ARATH Reviewed; 195 AA.
AC Q58CM8; Q9FF42;
DT 20-DEC-2005, integrated into UniProtKB/Swiss-Prot.
DT 26-APR-2005, sequence version 1.
DT 03-AUG-2022, entry version 114.
DE RecName: Full=Nuclear transcription factor Y subunit C-10;
DE Short=AtNF-YC-10;
GN Name=NFYC10; OrderedLocusNames=At5g38140; ORFNames=MXA21.21;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=9330910; DOI=10.1093/dnares/4.3.215;
RA Sato S., Kotani H., Nakamura Y., Kaneko T., Asamizu E., Fukami M.,
RA Miyajima N., Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. I. Sequence
RT features of the 1.6 Mb regions covered by twenty physically assigned P1
RT clones.";
RL DNA Res. 4:215-230(1997).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Shinn P., Chen H., Cheuk R.F., Kim C.J., Ecker J.R.;
RT "Arabidopsis cDNA clones.";
RL Submitted (MAR-2005) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: Stimulates the transcription of various genes by recognizing
CC and binding to a CCAAT motif in promoters. {ECO:0000250}.
CC -!- SUBUNIT: Heterotrimeric transcription factor composed of three
CC components, NF-YA, NF-YB and NF-YC. NF-YB and NF-YC must interact and
CC dimerize for NF-YA association and DNA binding (By similarity).
CC {ECO:0000250}.
CC -!- INTERACTION:
CC Q58CM8; Q9SLG0: NFYB1; NbExp=3; IntAct=EBI-15191737, EBI-2126009;
CC Q58CM8; Q67XJ2: NFYB10; NbExp=3; IntAct=EBI-15191737, EBI-2475824;
CC Q58CM8; Q9FGJ3: NFYB2; NbExp=3; IntAct=EBI-15191737, EBI-15192505;
CC Q58CM8; O23310: NFYB3; NbExp=3; IntAct=EBI-15191737, EBI-4452064;
CC Q58CM8; O04027: NFYB4; NbExp=3; IntAct=EBI-15191737, EBI-1751677;
CC Q58CM8; O82248: NFYB5; NbExp=3; IntAct=EBI-15191737, EBI-2475759;
CC Q58CM8; Q84W66-2: NFYB6; NbExp=3; IntAct=EBI-15191737, EBI-15191739;
CC Q58CM8; Q9SIT9: NFYB7; NbExp=3; IntAct=EBI-15191737, EBI-4459822;
CC Q58CM8; Q8VYK4: NFYB8; NbExp=3; IntAct=EBI-15191737, EBI-15192579;
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000250}.
CC -!- SIMILARITY: Belongs to the NFYC/HAP5 subunit family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAB11281.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AB005247; BAB11281.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002688; AED94272.1; -; Genomic_DNA.
DR EMBL; BT021919; AAX49368.1; -; mRNA.
DR RefSeq; NP_198630.2; NM_123174.5.
DR AlphaFoldDB; Q58CM8; -.
DR SMR; Q58CM8; -.
DR BioGRID; 19045; 27.
DR IntAct; Q58CM8; 25.
DR STRING; 3702.AT5G38140.1; -.
DR PaxDb; Q58CM8; -.
DR PRIDE; Q58CM8; -.
DR EnsemblPlants; AT5G38140.1; AT5G38140.1; AT5G38140.
DR GeneID; 833794; -.
DR Gramene; AT5G38140.1; AT5G38140.1; AT5G38140.
DR KEGG; ath:AT5G38140; -.
DR Araport; AT5G38140; -.
DR TAIR; locus:2176682; AT5G38140.
DR eggNOG; KOG1657; Eukaryota.
DR HOGENOM; CLU_1398105_0_0_1; -.
DR InParanoid; Q58CM8; -.
DR OMA; MILPDMN; -.
DR OrthoDB; 1558176at2759; -.
DR PhylomeDB; Q58CM8; -.
DR PRO; PR:Q58CM8; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q58CM8; baseline and differential.
DR Genevisible; Q58CM8; AT.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0001228; F:DNA-binding transcription activator activity, RNA polymerase II-specific; IBA:GO_Central.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; ISS:TAIR.
DR GO; GO:0046982; F:protein heterodimerization activity; IEA:InterPro.
DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IBA:GO_Central.
DR Gene3D; 1.10.20.10; -; 1.
DR InterPro; IPR003958; CBFA_NFYB_domain.
DR InterPro; IPR009072; Histone-fold.
DR Pfam; PF00808; CBFD_NFYB_HMF; 1.
DR SUPFAM; SSF47113; SSF47113; 1.
PE 1: Evidence at protein level;
KW Activator; DNA-binding; Nucleus; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..195
FT /note="Nuclear transcription factor Y subunit C-10"
FT /id="PRO_0000218259"
FT REGION 1..24
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 195 AA; 22431 MW; E8BD00EA6DD0FBDD CRC64;
MRRPKSSHVR MEPVAPRSHN TMPMLDQFRS NHPETSKIEG VSSLDTALKV FWNNQREQLG
NFAGQTHLPL SRVRKILKSD PEVKKISCDV PALFSKACEY FILEVTLRAW MHTQSCTRET
IRRCDIFQAV KNSGTYDFLI DRVPFGPHCV THQGVQPPAE MILPDMNVPI DMDQIEEENM
MEERSVGFDL NCDLQ