NHL10_ARATH
ID NHL10_ARATH Reviewed; 227 AA.
AC Q9SJ52;
DT 11-DEC-2013, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-2000, sequence version 1.
DT 03-AUG-2022, entry version 112.
DE RecName: Full=NDR1/HIN1-like protein 10 {ECO:0000303|PubMed:14666423};
DE Short=AtNHL10 {ECO:0000305};
DE AltName: Full=Protein YELLOW-LEAF-SPECIFIC GENE 9 {ECO:0000303|PubMed:11230571};
GN Name=NHL10 {ECO:0000303|PubMed:14666423};
GN Synonyms=YLS9 {ECO:0000303|PubMed:11230571}; OrderedLocusNames=At2g35980;
GN ORFNames=F11F19.11;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA], TISSUE SPECIFICITY, DEVELOPMENTAL STAGE, AND
RP INDUCTION.
RX PubMed=11230571; DOI=10.1093/pcp/pce021;
RA Yoshida S., Ito M., Nishida I., Watanabe A.;
RT "Isolation and RNA gel blot analysis of genes that could serve as potential
RT molecular markers for leaf senescence in Arabidopsis thaliana.";
RL Plant Cell Physiol. 42:170-178(2001).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617197; DOI=10.1038/45471;
RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S.,
RA Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
RA Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
RA Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
RA Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
RL Nature 402:761-768(1999).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
RN [6]
RP TISSUE SPECIFICITY, AND INDUCTION.
RX PubMed=14666423; DOI=10.1007/s00425-003-1169-2;
RA Zheng M.S., Takahashi H., Miyazaki A., Hamamoto H., Shah J., Yamaguchi I.,
RA Kusano T.;
RT "Up-regulation of Arabidopsis thaliana NHL10 in the hypersensitive response
RT to Cucumber mosaic virus infection and in senescing leaves is controlled by
RT signalling pathways that differ in salicylate involvement.";
RL Planta 218:740-750(2004).
RN [7]
RP INDUCTION.
RX PubMed=22947164; DOI=10.1111/j.1364-3703.2012.00827.x;
RA Po-Wen C., Singh P., Zimmerli L.;
RT "Priming of the Arabidopsis pattern-triggered immunity response upon
RT infection by necrotrophic Pectobacterium carotovorum bacteria.";
RL Mol. Plant Pathol. 14:58-70(2013).
RN [8]
RP INDUCTION BY BOTRYTIS CINEREA.
RX PubMed=23221759; DOI=10.4161/psb.22611;
RA Singh P., Chien C.C., Mishra S., Tsai C.H., Zimmerli L.;
RT "The Arabidopsis LECTIN RECEPTOR KINASE-VI.2 is a functional protein kinase
RT and is dispensable for basal resistance to Botrytis cinerea.";
RL Plant Signal. Behav. 8:E22611-E22611(2013).
CC -!- FUNCTION: May play a role in plant immunity.
CC {ECO:0000250|UniProtKB:Q9ZVD2}.
CC -!- SUBCELLULAR LOCATION: Cell membrane {ECO:0000250|UniProtKB:Q9FNH6};
CC Single-pass membrane protein {ECO:0000255}.
CC -!- TISSUE SPECIFICITY: Expressed in senescing leaves.
CC {ECO:0000269|PubMed:11230571, ECO:0000269|PubMed:14666423}.
CC -!- DEVELOPMENTAL STAGE: Up-regulated in leaves during natural senescence.
CC {ECO:0000269|PubMed:11230571}.
CC -!- INDUCTION: By ethylene, abscisic acid (ABA), beta-aminobutyric acid
CC (BABA), spermine, dark and infection with the cucumber mosaic virus
CC (CMV) (PubMed:11230571, PubMed:14666423, PubMed:22947164). Induced by
CC infection with the fungal pathogen Botrytis cinerea (PubMed:23221759).
CC {ECO:0000269|PubMed:11230571, ECO:0000269|PubMed:14666423,
CC ECO:0000269|PubMed:22947164, ECO:0000269|PubMed:23221759}.
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DR EMBL; AB047812; BAB32889.1; -; mRNA.
DR EMBL; AC007017; AAD21459.1; -; Genomic_DNA.
DR EMBL; CP002685; AEC09185.1; -; Genomic_DNA.
DR EMBL; BT002875; AAO22692.1; -; mRNA.
DR EMBL; BT004400; AAO42394.1; -; mRNA.
DR EMBL; AY086633; AAM63691.1; -; mRNA.
DR PIR; D84775; D84775.
DR RefSeq; NP_181142.1; NM_129157.3.
DR AlphaFoldDB; Q9SJ52; -.
DR STRING; 3702.AT2G35980.1; -.
DR SwissPalm; Q9SJ52; -.
DR PaxDb; Q9SJ52; -.
DR PRIDE; Q9SJ52; -.
DR ProteomicsDB; 249381; -.
DR EnsemblPlants; AT2G35980.1; AT2G35980.1; AT2G35980.
DR GeneID; 818171; -.
DR Gramene; AT2G35980.1; AT2G35980.1; AT2G35980.
DR KEGG; ath:AT2G35980; -.
DR Araport; AT2G35980; -.
DR TAIR; locus:2039185; AT2G35980.
DR eggNOG; ENOG502QUR9; Eukaryota.
DR HOGENOM; CLU_051752_2_0_1; -.
DR InParanoid; Q9SJ52; -.
DR OMA; PKCDVDY; -.
DR OrthoDB; 1373855at2759; -.
DR PhylomeDB; Q9SJ52; -.
DR PRO; PR:Q9SJ52; -.
DR Proteomes; UP000006548; Chromosome 2.
DR ExpressionAtlas; Q9SJ52; baseline and differential.
DR Genevisible; Q9SJ52; AT.
DR GO; GO:0046658; C:anchored component of plasma membrane; IBA:GO_Central.
DR GO; GO:0009507; C:chloroplast; IDA:TAIR.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR GO; GO:0009506; C:plasmodesma; IBA:GO_Central.
DR GO; GO:0051607; P:defense response to virus; IEP:TAIR.
DR GO; GO:0010150; P:leaf senescence; IMP:TAIR.
DR GO; GO:0051707; P:response to other organism; TAS:TAIR.
DR InterPro; IPR004864; LEA_2.
DR InterPro; IPR044839; NDR1-like.
DR PANTHER; PTHR31415; PTHR31415; 1.
DR Pfam; PF03168; LEA_2; 1.
PE 2: Evidence at transcript level;
KW Cell membrane; Glycoprotein; Membrane; Plant defense; Reference proteome;
KW Transmembrane; Transmembrane helix.
FT CHAIN 1..227
FT /note="NDR1/HIN1-like protein 10"
FT /id="PRO_0000424706"
FT TRANSMEM 42..62
FT /note="Helical"
FT /evidence="ECO:0000255"
FT CARBOHYD 138
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00498"
FT CARBOHYD 210
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00498"
SQ SEQUENCE 227 AA; 25659 MW; D710F87BFFAE5FF8 CRC64;
MAAEQPLNGA FYGPSVPPPA PKGYYRRGHG RGCGCCLLSL FVKVIISLIV ILGVAALIFW
LIVRPRAIKF HVTDASLTRF DHTSPDNILR YNLALTVPVR NPNKRIGLYY DRIEAHAYYE
GKRFSTITLT PFYQGHKNTT VLTPTFQGQN LVIFNAGQSR TLNAERISGV YNIEIKFRLR
VRFKLGDLKF RRIKPKVDCD DLRLPLSTSN GTTTTSTVFP IKCDFDF
