ID   NHR55_CAEEL             Reviewed;         424 AA.
AC   O16962; Q86PK7; Q9GTF7; Q9GTF8;
DT   16-NOV-2001, integrated into UniProtKB/Swiss-Prot.
DT   26-APR-2005, sequence version 2.
DT   25-MAY-2022, entry version 145.
DE   RecName: Full=Nuclear hormone receptor family member nhr-55;
GN   Name=nhr-55; ORFNames=T01G6.7;
OS   Caenorhabditis elegans.
OC   Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
OC   Caenorhabditis.
OX   NCBI_TaxID=6239;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [MRNA].
RX   PubMed=15983867; DOI=10.1007/s00239-004-0175-8;
RA   Robinson-Rechavi M., Maina C.V., Gissendanner C.R., Laudet V., Sluder A.;
RT   "Explosive lineage-specific expansion of the orphan nuclear receptor HNF4
RT   in nematodes.";
RL   J. Mol. Evol. 60:577-586(2005).
RN   [2]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=Bristol N2;
RX   PubMed=9851916; DOI=10.1126/science.282.5396.2012;
RG   The C. elegans sequencing consortium;
RT   "Genome sequence of the nematode C. elegans: a platform for investigating
RT   biology.";
RL   Science 282:2012-2018(1998).
CC   -!- FUNCTION: Orphan nuclear receptor.
CC   -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00407}.
CC   -!- SIMILARITY: Belongs to the nuclear hormone receptor family.
CC       {ECO:0000305}.
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DR   EMBL; AY204171; AAO39175.1; -; mRNA.
DR   EMBL; AF273801; AAG15150.1; -; mRNA.
DR   EMBL; AF273802; AAG15151.1; -; mRNA.
DR   EMBL; FO081653; CCD73122.1; -; Genomic_DNA.
DR   PIR; T32189; T32189.
DR   RefSeq; NP_503215.2; NM_070814.4.
DR   AlphaFoldDB; O16962; -.
DR   STRING; 6239.T01G6.7; -.
DR   PaxDb; O16962; -.
DR   PRIDE; O16962; -.
DR   EnsemblMetazoa; T01G6.7.1; T01G6.7.1; WBGene00003645.
DR   GeneID; 178570; -.
DR   KEGG; cel:CELE_T01G6.7; -.
DR   UCSC; T01G6.7; c. elegans.
DR   CTD; 178570; -.
DR   WormBase; T01G6.7; CE37786; WBGene00003645; nhr-55.
DR   eggNOG; KOG3575; Eukaryota.
DR   GeneTree; ENSGT00940000164378; -.
DR   HOGENOM; CLU_007368_7_1_1; -.
DR   InParanoid; O16962; -.
DR   OMA; MPQYSMR; -.
DR   OrthoDB; 997001at2759; -.
DR   PhylomeDB; O16962; -.
DR   PRO; PR:O16962; -.
DR   Proteomes; UP000001940; Chromosome V.
DR   Bgee; WBGene00003645; Expressed in material anatomical entity and 4 other tissues.
DR   GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR   GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR   GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.
DR   GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR   Gene3D; 1.10.565.10; -; 1.
DR   Gene3D; 3.30.50.10; -; 1.
DR   InterPro; IPR035500; NHR-like_dom_sf.
DR   InterPro; IPR000536; Nucl_hrmn_rcpt_lig-bd.
DR   InterPro; IPR001628; Znf_hrmn_rcpt.
DR   InterPro; IPR013088; Znf_NHR/GATA.
DR   Pfam; PF00104; Hormone_recep; 1.
DR   Pfam; PF00105; zf-C4; 1.
DR   PRINTS; PR00047; STROIDFINGER.
DR   SMART; SM00430; HOLI; 1.
DR   SMART; SM00399; ZnF_C4; 1.
DR   SUPFAM; SSF48508; SSF48508; 1.
DR   PROSITE; PS51843; NR_LBD; 1.
DR   PROSITE; PS00031; NUCLEAR_REC_DBD_1; 1.
DR   PROSITE; PS51030; NUCLEAR_REC_DBD_2; 1.
PE   2: Evidence at transcript level;
KW   DNA-binding; Metal-binding; Nucleus; Receptor; Reference proteome;
KW   Transcription; Transcription regulation; Zinc; Zinc-finger.
FT   CHAIN           1..424
FT                   /note="Nuclear hormone receptor family member nhr-55"
FT                   /id="PRO_0000053789"
FT   DOMAIN          169..424
FT                   /note="NR LBD"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU01189"
FT   DNA_BIND        25..100
FT                   /note="Nuclear receptor"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00407"
FT   ZN_FING         28..55
FT                   /note="NR C4-type"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00407"
FT   ZN_FING         64..88
FT                   /note="NR C4-type"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00407"
FT   REGION          1..20
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   424 AA;  49241 MW;  CD09E3C41E6E4CB4 CRC64;
     MNSPSSSSSF CSSSSSPSSL VLYSPDTCQV CGQKSHGKHF GAVTCRACAA FFRRCGSANN
     FKPCRRNMNC EFLKNGWFNC KPCRLKKCQD VGMTIENFQF DRDSFSPKKA KIALENFHNQ
     VPFSIATFTG RSNLIVISAP TEEECIPKCY IDVQFLIDKL SNVLKEGPEV PLHTPNALEK
     LALGLQIIRG RKRELKLITK LGKEETLGLW QDDMMKVAKW LTYFDDFQQL SHRMRSEMLK
     GMWKVWSRLE TLALTAMGRR LMICQKDMIM THTEKEQVMA HPKQIEVDIS WCSRYTLEQL
     RFFADSDLDD RNEQVIQAMM ELQPTDVELS YMMCQACLHY AGKRYQGEVL EIAERFQETL
     SNHLHDYYVN RMNMPQYSMR VANLMKINNH IQLDIYRGRV KYDLARVFDV FYLEFSHPEV
     FIDL