NIGT1_ORYSJ
ID NIGT1_ORYSJ Reviewed; 412 AA.
AC Q6Z869;
DT 12-APR-2017, integrated into UniProtKB/Swiss-Prot.
DT 05-JUL-2004, sequence version 1.
DT 03-AUG-2022, entry version 145.
DE RecName: Full=Transcription factor NIGT1 {ECO:0000305};
DE AltName: Full=MYB-domain transcription factor NIGT1 {ECO:0000305};
DE AltName: Full=Protein NITRATE-INDUCIBLE GARP-TYPE TRANSCRIPTIONAL REPRESSOR 1 {ECO:0000303|PubMed:23324170};
GN Name=NIGT1 {ECO:0000303|PubMed:23324170};
GN OrderedLocusNames=Os02g0325600 {ECO:0000312|EMBL:BAS78407.1},
GN LOC_Os02g22020 {ECO:0000305};
GN ORFNames=P0476C12.20 {ECO:0000312|EMBL:BAD15692.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [5]
RP FUNCTION, SUBCELLULAR LOCATION, AND INDUCTION BY NITRATE.
RX PubMed=23324170; DOI=10.1093/pcp/pct007;
RA Sawaki N., Tsujimoto R., Shigyo M., Konishi M., Toki S., Fujiwara T.,
RA Yanagisawa S.;
RT "A nitrate-inducible GARP family gene encodes an auto-repressible
RT transcriptional repressor in rice.";
RL Plant Cell Physiol. 54:506-517(2013).
CC -!- FUNCTION: Transcriptional repressor that may play a role in response to
CC nitrogen. May be involved in a time-dependent signaling for
CC transcriptional regulation of nitrate-responsive genes. Binds
CC specifically to the DNA sequence motif 5'-GAATC-3' or 5'-GAATATTC-3'.
CC Represses the activity of its own promoter trough binding to these
CC motifs.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00625,
CC ECO:0000269|PubMed:23324170}.
CC -!- INDUCTION: Induced by nitrate. {ECO:0000269|PubMed:23324170}.
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DR EMBL; AP004789; BAD15692.1; -; Genomic_DNA.
DR EMBL; AP008208; BAF08616.1; -; Genomic_DNA.
DR EMBL; AP014958; BAS78407.1; -; Genomic_DNA.
DR EMBL; AK064355; BAG89081.1; -; mRNA.
DR EMBL; AK101809; BAG95241.1; -; mRNA.
DR RefSeq; XP_015623779.1; XM_015768293.1.
DR AlphaFoldDB; Q6Z869; -.
DR SMR; Q6Z869; -.
DR STRING; 4530.OS02T0325600-01; -.
DR PaxDb; Q6Z869; -.
DR PRIDE; Q6Z869; -.
DR EnsemblPlants; Os02t0325600-01; Os02t0325600-01; Os02g0325600.
DR EnsemblPlants; Os02t0325600-02; Os02t0325600-02; Os02g0325600.
DR GeneID; 4329184; -.
DR Gramene; Os02t0325600-01; Os02t0325600-01; Os02g0325600.
DR Gramene; Os02t0325600-02; Os02t0325600-02; Os02g0325600.
DR KEGG; osa:4329184; -.
DR eggNOG; ENOG502QSXV; Eukaryota.
DR HOGENOM; CLU_036551_0_0_1; -.
DR InParanoid; Q6Z869; -.
DR OMA; YMHGQSE; -.
DR OrthoDB; 907731at2759; -.
DR Proteomes; UP000000763; Chromosome 2.
DR Proteomes; UP000059680; Chromosome 2.
DR GO; GO:0005634; C:nucleus; IDA:UniProtKB.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR GO; GO:0043565; F:sequence-specific DNA binding; IDA:UniProtKB.
DR GO; GO:0045892; P:negative regulation of transcription, DNA-templated; IDA:UniProtKB.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR044787; HRS1-like.
DR InterPro; IPR017930; Myb_dom.
DR InterPro; IPR006447; Myb_dom_plants.
DR PANTHER; PTHR31003; PTHR31003; 1.
DR Pfam; PF00249; Myb_DNA-binding; 1.
DR SUPFAM; SSF46689; SSF46689; 1.
DR TIGRFAMs; TIGR01557; myb_SHAQKYF; 1.
DR PROSITE; PS51294; HTH_MYB; 1.
PE 2: Evidence at transcript level;
KW DNA-binding; Nucleus; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..412
FT /note="Transcription factor NIGT1"
FT /id="PRO_0000439549"
FT DOMAIN 232..292
FT /note="HTH myb-type"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00625"
FT DNA_BIND 263..288
FT /note="H-T-H motif"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00625"
FT REGION 54..241
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 286..310
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 358..412
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 91..110
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 184..198
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 199..241
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 368..384
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 392..412
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 412 AA; 44579 MW; 96830018B707BB8B CRC64;
MEVDHADRDG ARRRCREYLL ALEEERRKIQ VFQRELPLCF DLVTQTIEGM RSQMDAAGSE
ETVSDQGPPP VLEEFIPLKP SLSLSSSEEE STHADAAKSG KKEEAETSER HSSPPPPPPE
AKKVTPDWLQ SVQLWSQEEP QQPSSPSPTP TKDLPCKPVA LNARKAGGAF QPFEKEKRAE
LPASSTTAAA SSTVVGDSGD KPTDDDTEKH METDKDNDKD AKDKDKEGQS QPHRKPRRCW
APELHRRFLQ ALQQLGGSHV ATPKQIRELM KVDGLTNDEV KSHLQKYRLH TRRPSSTGQS
SAAAGVPAPP APQFVVVGSI WVPPPEYAAA AAAQQHVQLA AAGNNASGSA NPVYAPVAML
PAGLQPHSHR KQHQQQQQGQ RHSGSEGRRS GDAGDGSSSS PAVSSSSQTT SA
