NLP2_ORYSJ
ID NLP2_ORYSJ Reviewed; 936 AA.
AC Q0JC27; A0A0P0WBZ3; B9FFX1; Q7XQI3;
DT 30-NOV-2010, integrated into UniProtKB/Swiss-Prot.
DT 30-NOV-2010, sequence version 2.
DT 03-AUG-2022, entry version 79.
DE RecName: Full=Protein NLP2 {ECO:0000303|PubMed:15785851};
DE Short=OsNLP2 {ECO:0000303|PubMed:15785851};
DE AltName: Full=NIN-like protein 2 {ECO:0000303|PubMed:15785851};
DE AltName: Full=Nodule inception protein-like protein 2 {ECO:0000303|PubMed:15785851};
GN Name=NLP2 {ECO:0000303|PubMed:15785851};
GN OrderedLocusNames=Os04g0495800 {ECO:0000312|EMBL:BAS89886.1},
GN LOC_Os04g41850 {ECO:0000305};
GN ORFNames=J033120P08 {ECO:0000312|EMBL:BAG95924.1},
GN OsJ_15319 {ECO:0000312|EMBL:EEE61255.1},
GN OSJNBa0067K08.5 {ECO:0000312|EMBL:CAE03110.2};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12447439; DOI=10.1038/nature01183;
RA Feng Q., Zhang Y., Hao P., Wang S., Fu G., Huang Y., Li Y., Zhu J., Liu Y.,
RA Hu X., Jia P., Zhang Y., Zhao Q., Ying K., Yu S., Tang Y., Weng Q.,
RA Zhang L., Lu Y., Mu J., Lu Y., Zhang L.S., Yu Z., Fan D., Liu X., Lu T.,
RA Li C., Wu Y., Sun T., Lei H., Li T., Hu H., Guan J., Wu M., Zhang R.,
RA Zhou B., Chen Z., Chen L., Jin Z., Wang R., Yin H., Cai Z., Ren S., Lv G.,
RA Gu W., Zhu G., Tu Y., Jia J., Zhang Y., Chen J., Kang H., Chen X., Shao C.,
RA Sun Y., Hu Q., Zhang X., Zhang W., Wang L., Ding C., Sheng H., Gu J.,
RA Chen S., Ni L., Zhu F., Chen W., Lan L., Lai Y., Cheng Z., Gu M., Jiang J.,
RA Li J., Hong G., Xue Y., Han B.;
RT "Sequence and analysis of rice chromosome 4.";
RL Nature 420:316-320(2002).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [7]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=15785851; DOI=10.1007/s00239-004-0144-2;
RA Schauser L., Wieloch W., Stougaard J.;
RT "Evolution of NIN-like proteins in Arabidopsis, rice, and Lotus
RT japonicus.";
RL J. Mol. Evol. 60:229-237(2005).
CC -!- FUNCTION: Probable transcription factor. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00852}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAF15110.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=BAS89886.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=EEE61255.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AL606627; CAE03110.2; -; Genomic_DNA.
DR EMBL; AP008210; BAF15110.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AP014960; BAS89886.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CM000141; EEE61255.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AK103154; BAG95924.1; -; mRNA.
DR RefSeq; XP_015636521.1; XM_015781035.1.
DR RefSeq; XP_015636522.1; XM_015781036.1.
DR RefSeq; XP_015636523.1; XM_015781037.1.
DR AlphaFoldDB; Q0JC27; -.
DR SMR; Q0JC27; -.
DR STRING; 4530.OS04T0495800-01; -.
DR PaxDb; Q0JC27; -.
DR PRIDE; Q0JC27; -.
DR GeneID; 4336275; -.
DR KEGG; osa:4336275; -.
DR eggNOG; ENOG502QQ6H; Eukaryota.
DR InParanoid; Q0JC27; -.
DR OrthoDB; 100342at2759; -.
DR Proteomes; UP000000763; Chromosome 4.
DR Proteomes; UP000007752; Chromosome 4.
DR Proteomes; UP000059680; Chromosome 4.
DR Genevisible; Q0JC27; OS.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR InterPro; IPR045012; NLP.
DR InterPro; IPR000270; PB1_dom.
DR InterPro; IPR003035; RWP-RK_dom.
DR PANTHER; PTHR32002; PTHR32002; 1.
DR Pfam; PF00564; PB1; 1.
DR Pfam; PF02042; RWP-RK; 1.
DR SMART; SM00666; PB1; 1.
DR PROSITE; PS51745; PB1; 1.
DR PROSITE; PS51519; RWP_RK; 1.
PE 2: Evidence at transcript level;
KW DNA-binding; Nucleus; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..936
FT /note="Protein NLP2"
FT /id="PRO_0000401501"
FT DOMAIN 550..635
FT /note="RWP-RK"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00852"
FT DOMAIN 834..916
FT /note="PB1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01081"
FT REGION 99..130
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 666..697
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 753..782
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 794..827
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 802..827
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 936 AA; 101603 MW; C1804C4187871F01 CRC64;
MDMPTPSNRA GCNGNTGGTM GPSDDPYGAA AMNLDCYSEI YSPSVADQLF SLLNDPAAHR
MFAMWPSMGS SPCAAGTSED MPLDAYSGLG EAVEEPSQIM SVNPTEAEKT GKSSGELGSD
DGAHQGSSMV PRSVVGSSLA DRMLMALSLF RESLGSGALA QVWMPVEQEG HVVLSTCEQP
FLLDQVLAGY REVSRHFVFS AKEEPGLQPG LPGRVFISGV PEWTSSVLYY NRPEYLRMEH
ALHHEIRGSL AMPIYDPSKD SCCAVFELVT RKEKPDFSAE MDNVCNALQA VNLKATKGSS
NQKFYTENQK FAFTEILDVL RAICHAHMLP LALTWVPTSN GIDGGYVVGK DGASFSQSGK
TIIRIHESAC YVNDGKMQGF LQACARRHLE KGQGIAGRAL KSNLPFFSPD IREYSIEDYP
LAHHARKFSL HAAVAIRLRS TYTGNDDYIL EFFLPVSCKG SGEQQMLLNN LSSTMQRICK
SLRTVYEAEV DNVNAGTAAV FRKNNESCLP TGHTESSSHG DQSITGASFE DTSLANKPGV
MEPELAEQVQ PSSIGHAEKK RSTAEKNISL DVLRKYFSGS LKDAAKSLGV CPTTLKRICR
HHGISRWPSR KINKVNRSLK KIQTVINSVH GVDRSLQYDP ATGSLVPVVS LPEKLTFPSC
DGLPTPSVGK TVEENSDLKS EEGCSLPDGS QRQSCQLQIS DVKKSNEDEF HIGSGNSDFY
GANATAKSNS EVTQGPLCPT GAFSALHLKG TDCTNPSSSL RPSSESTRNQ IVGRNSPSIQ
QEDLDMLDNH EAEDKDHMHP STSGMTDSSS GSASSHPTFK QNTRSALKDA ASPALTVKAT
YNGDTVRFKF LPSMGWYHLL EEIAKRFKLP TGAYQLKYKD DEDEWVILAN DSDLQECVDV
LDSIGSRIVK LQVRDLPCIV SSSGSSTCLQ LAAHSS
