NLP3_ARATH
ID NLP3_ARATH Reviewed; 767 AA.
AC Q9SVF1;
DT 30-NOV-2010, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-2000, sequence version 1.
DT 03-AUG-2022, entry version 118.
DE RecName: Full=Protein NLP3;
DE Short=AtNLP3;
DE AltName: Full=NIN-like protein 3;
DE AltName: Full=Nodule inception protein-like protein 3;
GN Name=NLP3; OrderedLocusNames=At4g38340; ORFNames=F22I13.110;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617198; DOI=10.1038/47134;
RA Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., Pohl T.,
RA Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., Harris B.,
RA Ansorge W., Brandt P., Grivell L.A., Rieger M., Weichselgartner M.,
RA de Simone V., Obermaier B., Mache R., Mueller M., Kreis M., Delseny M.,
RA Puigdomenech P., Watson M., Schmidtheini T., Reichert B., Portetelle D.,
RA Perez-Alonso M., Boutry M., Bancroft I., Vos P., Hoheisel J.,
RA Zimmermann W., Wedler H., Ridley P., Langham S.-A., McCullagh B.,
RA Bilham L., Robben J., van der Schueren J., Grymonprez B., Chuang Y.-J.,
RA Vandenbussche F., Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R.,
RA Defoor E., Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M.,
RA Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., Mooijman P.,
RA Klein Lankhorst R., Rose M., Hauf J., Koetter P., Berneiser S., Hempel S.,
RA Feldpausch M., Lamberth S., Van den Daele H., De Keyser A., Buysshaert C.,
RA Gielen J., Villarroel R., De Clercq R., van Montagu M., Rogers J.,
RA Cronin A., Quail M.A., Bray-Allen S., Clark L., Doggett J., Hall S.,
RA Kay M., Lennard N., McLay K., Mayes R., Pettett A., Rajandream M.A.,
RA Lyne M., Benes V., Rechmann S., Borkova D., Bloecker H., Scharfe M.,
RA Grimm M., Loehnert T.-H., Dose S., de Haan M., Maarse A.C., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D.,
RA Herzl A., Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E.,
RA Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., Schnabl S.,
RA Hiller R., Schmidt W., Lecharny A., Aubourg S., Chefdor F., Cooke R.,
RA Berger C., Monfort A., Casacuberta E., Gibbons T., Weber N., Vandenbol M.,
RA Bargues M., Terol J., Torres A., Perez-Perez A., Purnelle B., Bent E.,
RA Johnson S., Tacon D., Jesse T., Heijnen L., Schwarz S., Scholler P.,
RA Heber S., Francs P., Bielke C., Frishman D., Haase D., Lemcke K.,
RA Mewes H.-W., Stocker S., Zaccaria P., Bevan M., Wilson R.K.,
RA de la Bastide M., Habermann K., Parnell L., Dedhia N., Gnoj L., Schutz K.,
RA Huang E., Spiegel L., Sekhon M., Murray J., Sheet P., Cordes M.,
RA Abu-Threideh J., Stoneking T., Kalicki J., Graves T., Harmon G.,
RA Edwards J., Latreille P., Courtney L., Cloud J., Abbott A., Scott K.,
RA Johnson D., Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K.,
RA Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W.,
RA Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., Du H.,
RA Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., Antonoiu B.,
RA Zidanic M., Strong C., Sun H., Lamar B., Yordan C., Ma P., Zhong J.,
RA Preston R., Vil D., Shekher M., Matero A., Shah R., Swaby I.K.,
RA O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., Granat S., Shohdy N.,
RA Hasegawa A., Hameed A., Lodhi M., Johnson A., Chen E., Marra M.A.,
RA Martienssen R., McCombie W.R.;
RT "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.";
RL Nature 402:769-777(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP INDUCTION BY NITRATE.
RX PubMed=15375205; DOI=10.1104/pp.104.047019;
RA Scheible W.R., Morcuende R., Czechowski T., Fritz C., Osuna D.,
RA Palacios-Rojas N., Schindelasch D., Thimm O., Udvardi M.K., Stitt M.;
RT "Genome-wide reprogramming of primary and secondary metabolism, protein
RT synthesis, cellular growth processes, and the regulatory infrastructure of
RT Arabidopsis in response to nitrogen.";
RL Plant Physiol. 136:2483-2499(2004).
RN [4]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=15785851; DOI=10.1007/s00239-004-0144-2;
RA Schauser L., Wieloch W., Stougaard J.;
RT "Evolution of NIN-like proteins in Arabidopsis, rice, and Lotus
RT japonicus.";
RL J. Mol. Evol. 60:229-237(2005).
CC -!- FUNCTION: Probable transcription factor. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00852}.
CC -!- INDUCTION: Up-regulated by nitrate. {ECO:0000269|PubMed:15375205}.
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DR EMBL; AL035539; CAB37490.1; -; Genomic_DNA.
DR EMBL; AL161593; CAB80499.1; -; Genomic_DNA.
DR EMBL; CP002687; AEE86915.1; -; Genomic_DNA.
DR PIR; T05662; T05662.
DR RefSeq; NP_195547.1; NM_119996.2.
DR AlphaFoldDB; Q9SVF1; -.
DR SMR; Q9SVF1; -.
DR STRING; 3702.AT4G38340.1; -.
DR PaxDb; Q9SVF1; -.
DR PRIDE; Q9SVF1; -.
DR EnsemblPlants; AT4G38340.1; AT4G38340.1; AT4G38340.
DR GeneID; 829991; -.
DR Gramene; AT4G38340.1; AT4G38340.1; AT4G38340.
DR KEGG; ath:AT4G38340; -.
DR Araport; AT4G38340; -.
DR TAIR; locus:2121738; AT4G38340.
DR eggNOG; ENOG502QQ6H; Eukaryota.
DR HOGENOM; CLU_008971_0_0_1; -.
DR InParanoid; Q9SVF1; -.
DR OrthoDB; 255222at2759; -.
DR PhylomeDB; Q9SVF1; -.
DR PRO; PR:Q9SVF1; -.
DR Proteomes; UP000006548; Chromosome 4.
DR ExpressionAtlas; Q9SVF1; baseline and differential.
DR Genevisible; Q9SVF1; AT.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; ISS:TAIR.
DR GO; GO:0006355; P:regulation of transcription, DNA-templated; TAS:TAIR.
DR CDD; cd06407; PB1_NLP; 1.
DR InterPro; IPR045012; NLP.
DR InterPro; IPR000270; PB1_dom.
DR InterPro; IPR034891; PB1_NLP.
DR InterPro; IPR003035; RWP-RK_dom.
DR PANTHER; PTHR32002; PTHR32002; 1.
DR Pfam; PF00564; PB1; 1.
DR Pfam; PF02042; RWP-RK; 1.
DR SMART; SM00666; PB1; 1.
DR PROSITE; PS51745; PB1; 1.
DR PROSITE; PS51519; RWP_RK; 1.
PE 2: Evidence at transcript level;
KW Coiled coil; DNA-binding; Nucleus; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..767
FT /note="Protein NLP3"
FT /id="PRO_0000401488"
FT DOMAIN 482..566
FT /note="RWP-RK"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00852"
FT DOMAIN 673..759
FT /note="PB1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01081"
FT REGION 462..494
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 590..622
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 646..672
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 485..506
FT /evidence="ECO:0000255"
FT COMPBIAS 470..486
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 646..663
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 767 AA; 85067 MW; 19A844E729DB8481 CRC64;
MVGPFKKILH AHNQRFPPSS SSSLDPVVDD SSRKQTRIIL SYLLHLSLSL HITYSLCLLH
FFFGSSNPFS PMEESNNSAV VDFPDNFMDQ LLWEECWEEE ATQHDQALSS PSGLKERVAC
AMGHLQEVMG ERELLIQLWV PVETRSGRVL STEEQPYSIN TFSQSQSLAL YRDASAGYSF
AAEVGSEQLV GLPGRVFLRR MPEWTPDVRF FRKEEYPRIG YARRYQVRAT LALPLFQGTS
GNCVAVMEMV TTHRNLEYAS QLSTICHALE AFDLRTSQTS IVPASLKVTS SSSSSSRTEV
ASILQGICSS HGLPLAVTWG HQDSSSCLSA LISASYAADH GSRCFLAACS EHHLLGGEGI
AGRAFATKKQ CFATDVAIFS KWSYPLSHYA KMFDLHAALA VPILTRGNRT VQFVLELFFP
RDCLDIQTHS LTLASQLKLR FQSSPHLMVD DNQIAEEVRD AATPPLTQED PKGKQVSFSF
SSASSLENRK RKTKAEKDIT LDTLRQHFAG SLKDAAKNIG VCPTTLKRIC RQNGISRWPS
RKIKKVGHSL RKLQVVMDSV EGVQGSLHLA SFYSSFPQLQ SSSSSSFPFI NPTQTVHVPP
KSPPSSSGSQ SSSGSSTCCS SEEQQLGGFQ KPALSHPQLL TLSSMHEDQR PVRVTSSLPP
LPSATTPRKA KDGMKVKAMF GDSMLRMSLL PHSRLTDLRR EIAKRFGMDD VLRSNFSLKY
LDDDQEWVLL TCDADLEECI QVYKSSSLKE TIRILVHHPL SRPSFGS
