NLP3_ORYSJ
ID NLP3_ORYSJ Reviewed; 938 AA.
AC Q5NB82; A0A0P0V0A4;
DT 30-NOV-2010, integrated into UniProtKB/Swiss-Prot.
DT 01-FEB-2005, sequence version 1.
DT 25-MAY-2022, entry version 83.
DE RecName: Full=Protein NLP3;
DE Short=AtNLP3;
DE AltName: Full=NIN-like protein 3;
DE AltName: Full=Nodule inception protein-like protein 3;
GN Name=NLP3; OrderedLocusNames=Os01g0236700, LOC_Os01g13540;
GN ORFNames=OsJ_01032, P0708G02.34;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12447438; DOI=10.1038/nature01184;
RA Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y.,
RA Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H.,
RA Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., Okamoto M.,
RA Ando T., Aoki H., Arita K., Hamada M., Harada C., Hijishita S., Honda M.,
RA Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito S., Ito T.,
RA Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Katagiri S.,
RA Kikuta A., Kobayashi N., Kono I., Machita K., Maehara T., Mizuno H.,
RA Mizubayashi T., Mukai Y., Nagasaki H., Nakashima M., Nakama Y.,
RA Nakamichi Y., Nakamura M., Namiki N., Negishi M., Ohta I., Ono N., Saji S.,
RA Sakai K., Shibata M., Shimokawa T., Shomura A., Song J., Takazaki Y.,
RA Terasawa K., Tsuji K., Waki K., Yamagata H., Yamane H., Yoshiki S.,
RA Yoshihara R., Yukawa K., Zhong H., Iwama H., Endo T., Ito H., Hahn J.H.,
RA Kim H.-I., Eun M.-Y., Yano M., Jiang J., Gojobori T.;
RT "The genome sequence and structure of rice chromosome 1.";
RL Nature 420:312-316(2002).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [6]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=15785851; DOI=10.1007/s00239-004-0144-2;
RA Schauser L., Wieloch W., Stougaard J.;
RT "Evolution of NIN-like proteins in Arabidopsis, rice, and Lotus
RT japonicus.";
RL J. Mol. Evol. 60:229-237(2005).
CC -!- FUNCTION: Probable transcription factor. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00852}.
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DR EMBL; AP001539; BAD81274.1; -; Genomic_DNA.
DR EMBL; AP008207; BAF04444.1; -; Genomic_DNA.
DR EMBL; AP014957; BAS71232.1; -; Genomic_DNA.
DR EMBL; CM000138; EAZ11184.1; -; Genomic_DNA.
DR RefSeq; XP_015613020.1; XM_015757534.1.
DR AlphaFoldDB; Q5NB82; -.
DR SMR; Q5NB82; -.
DR STRING; 4530.OS01T0236700-01; -.
DR PaxDb; Q5NB82; -.
DR PRIDE; Q5NB82; -.
DR EnsemblPlants; Os01t0236700-01; Os01t0236700-01; Os01g0236700.
DR GeneID; 4327787; -.
DR Gramene; Os01t0236700-01; Os01t0236700-01; Os01g0236700.
DR KEGG; osa:4327787; -.
DR eggNOG; ENOG502QRQ2; Eukaryota.
DR HOGENOM; CLU_008971_0_0_1; -.
DR InParanoid; Q5NB82; -.
DR OMA; SQRAHEV; -.
DR OrthoDB; 255222at2759; -.
DR Proteomes; UP000000763; Chromosome 1.
DR Proteomes; UP000007752; Chromosome 1.
DR Proteomes; UP000059680; Chromosome 1.
DR ExpressionAtlas; Q5NB82; baseline and differential.
DR Genevisible; Q5NB82; OS.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR CDD; cd06407; PB1_NLP; 1.
DR InterPro; IPR045012; NLP.
DR InterPro; IPR000270; PB1_dom.
DR InterPro; IPR034891; PB1_NLP.
DR InterPro; IPR003035; RWP-RK_dom.
DR PANTHER; PTHR32002; PTHR32002; 1.
DR Pfam; PF00564; PB1; 1.
DR Pfam; PF02042; RWP-RK; 1.
DR SMART; SM00666; PB1; 1.
DR PROSITE; PS51745; PB1; 1.
DR PROSITE; PS51519; RWP_RK; 1.
PE 3: Inferred from homology;
KW Coiled coil; DNA-binding; Nucleus; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..938
FT /note="Protein NLP3"
FT /id="PRO_0000401502"
FT DOMAIN 585..666
FT /note="RWP-RK"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00852"
FT DOMAIN 847..926
FT /note="PB1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01081"
FT REGION 1..26
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 557..597
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 743..769
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 640..662
FT /evidence="ECO:0000255"
FT COMPBIAS 557..582
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 583..597
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 938 AA; 102439 MW; 761734B2962CC8E0 CRC64;
MEVDPSSSLP GAGEGGGGGI GGGGGDLWPF DSLTTSLLFS SVSASPQPLP ASSSSWLTPP
SPLWLFDERQ LLPLDMGAPA APATAPPAEA AAVVEEVHRT RSGNSDTTSK RVDQINSKWQ
FHLSIDDNTD SSCLFKERLT QALRYFKEST DQHLLVQVWA PVKSGDRYVL TTSGQPFVLD
QQSIGLLQYR AVSMMYMFSV DGENAGELGL PGRVYKQKVP EWTPNVQYYS STEYPRLNHA
ISYNVHGTVA LPVFDPSVQN CIAVVELIMT SKKINYAGEV DKVCKALEAV NLKSTEILDH
PNVQICNEGR QSALVEILEI LTVVCEEHKL PLAQTWVPCK YRSVLAHGGG VKKSCLSFDG
SCMGEVCMST SDVAFHVIDA HMWGFRDACV EHHLQKGQGV SGKAFIYRRP CFSKDISQFC
KLEYPLVHYA RMFGLAGCFA ICLQSMYTGD DDYILEFFLP PNCRNEDDQN ALLESILARM
KKCLRTLKVV GNGDTNEVCL QISNVLIIET EDLKTNVHFE NSEGCFRESP ESNGSQRVHE
VDNDGNKVSI MSERHLLADD NSQNNGASVG RPNGSGASDS LHKSNKPPER RRGKAEKTIS
LDVLQQYFSG SLKNAAKSLG VCPTTMKRIC RQHGISRWPS RKINKVNRSL SKLKQVIESV
QGSDAAFNLT SITGPLPIPV GPSSDSQNLE KASPNKVAEL SNLAVEGDRD SSLQKPIEND
NLAILMSQQG FIDANNNLQL EADKASHSRS SSGEGSINSR TSEASCHGSP ANQTFVCKPI
ASTFAEPQLI PEAFTKEPFQ EPALPLSRML IEDSGSSKDL KNLFTSAVDQ PFLARSSNLA
LMQNSGTVTI KASFKEDIVR FRFPCSGSVT ALKDEVAKRL RMDVGMFDIK YLDDDHEWVK
LACNADLEEC MEISGSHVIR LLVSDVAAHL GSSCGSSG
