NLP4_ARATH
ID NLP4_ARATH Reviewed; 844 AA.
AC Q9LE38;
DT 30-NOV-2010, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 03-AUG-2022, entry version 115.
DE RecName: Full=Protein NLP4;
DE Short=AtNLP4;
DE AltName: Full=NIN-like protein 4;
DE AltName: Full=Nodule inception protein-like protein 4;
GN Name=NLP4; OrderedLocusNames=At1g20640; ORFNames=F2D10.12;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=15785851; DOI=10.1007/s00239-004-0144-2;
RA Schauser L., Wieloch W., Stougaard J.;
RT "Evolution of NIN-like proteins in Arabidopsis, rice, and Lotus
RT japonicus.";
RL J. Mol. Evol. 60:229-237(2005).
CC -!- FUNCTION: Probable transcription factor. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00852}.
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DR EMBL; AC027665; AAF79626.1; -; Genomic_DNA.
DR EMBL; AC069251; AAF80612.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE29999.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE30000.1; -; Genomic_DNA.
DR EMBL; CP002684; ANM60987.1; -; Genomic_DNA.
DR EMBL; AY091015; AAM14037.1; -; mRNA.
DR EMBL; AY117237; AAM51312.1; -; mRNA.
DR PIR; C86339; C86339.
DR RefSeq; NP_001319052.1; NM_001332454.1.
DR RefSeq; NP_173488.1; NM_101915.3.
DR RefSeq; NP_973874.1; NM_202145.1.
DR AlphaFoldDB; Q9LE38; -.
DR SMR; Q9LE38; -.
DR BioGRID; 23892; 3.
DR IntAct; Q9LE38; 2.
DR STRING; 3702.AT1G20640.1; -.
DR PaxDb; Q9LE38; -.
DR PRIDE; Q9LE38; -.
DR ProteomicsDB; 251177; -.
DR EnsemblPlants; AT1G20640.1; AT1G20640.1; AT1G20640.
DR EnsemblPlants; AT1G20640.2; AT1G20640.2; AT1G20640.
DR EnsemblPlants; AT1G20640.3; AT1G20640.3; AT1G20640.
DR GeneID; 838653; -.
DR Gramene; AT1G20640.1; AT1G20640.1; AT1G20640.
DR Gramene; AT1G20640.2; AT1G20640.2; AT1G20640.
DR Gramene; AT1G20640.3; AT1G20640.3; AT1G20640.
DR KEGG; ath:AT1G20640; -.
DR Araport; AT1G20640; -.
DR TAIR; locus:2030397; AT1G20640.
DR eggNOG; ENOG502QRQ2; Eukaryota.
DR HOGENOM; CLU_008971_0_0_1; -.
DR InParanoid; Q9LE38; -.
DR OMA; CITHKLP; -.
DR OrthoDB; 210841at2759; -.
DR PhylomeDB; Q9LE38; -.
DR PRO; PR:Q9LE38; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9LE38; baseline and differential.
DR Genevisible; Q9LE38; AT.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; ISS:TAIR.
DR GO; GO:0010167; P:response to nitrate; IEP:TAIR.
DR CDD; cd06407; PB1_NLP; 1.
DR InterPro; IPR045012; NLP.
DR InterPro; IPR000270; PB1_dom.
DR InterPro; IPR034891; PB1_NLP.
DR InterPro; IPR003035; RWP-RK_dom.
DR PANTHER; PTHR32002; PTHR32002; 2.
DR Pfam; PF00564; PB1; 1.
DR Pfam; PF02042; RWP-RK; 1.
DR SMART; SM00666; PB1; 1.
DR PROSITE; PS51745; PB1; 1.
DR PROSITE; PS51519; RWP_RK; 1.
PE 2: Evidence at transcript level;
KW DNA-binding; Nucleus; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..844
FT /note="Protein NLP4"
FT /id="PRO_0000401489"
FT DOMAIN 540..626
FT /note="RWP-RK"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00852"
FT DOMAIN 744..827
FT /note="PB1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01081"
FT REGION 641..709
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 664..709
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 844 AA; 94232 MW; 2336B5B8C535B73F CRC64;
MEDSFLQSEN VVMDADFMDG LLLDGCWLET TDGSEFLNIA PSTSSVSPFD PTSFMWSPTQ
DTSALCTSGV VSQMYGQDCV ERSSLDEFQW NKRWWIGPGG GGSSVTERLV QAVEHIKDYT
TARGSLIQLW VPVNRGGKRV LTTKEQPFSH DPLCQRLANY REISVNYHFS AEQDDSKALA
GLPGRVFLGK LPEWTPDVRF FKSEEYPRVH HAQDCDVRGT LAIPVFEQGS KICLGVIEVV
MTTEMVKLRP ELESICRALQ AVDLRSTELP IPPSLKGCDL SYKAALPEIR NLLRCACETH
KLPLAQTWVS CQQQNKSGCR HNDENYIHCV STIDDACYVG DPTVREFHEA CSEHHLLKGQ
GVAGQAFLTN GPCFSSDVSN YKKSEYPLSH HANMYGLHGA VAIRLRCIHT GSADFVLEFF
LPKDCDDLEE QRKMLNALST IMAHVPRSLR TVTDKELEEE SEVIEREEIV TPKIENASEL
HGNSPWNASL EEIQRSNNTS NPQNLGLVFD GGDKPNDGFG LKRGFDYTMD SNVNESSTFS
SGGFSMMAEK KRTKADKTIT LDVLRQYFAG SLKDAAKNIG VCPTTLKRIC RQHGIQRWPS
RKIKKVGHSL QKIQRVIDSV QGVSGPLPIG SFYANFPNLV SQSQEPSQQA KTTPPPPPPV
QLAKSPVSSY SHSSNSSQCC SSETQLNSGA TTDPPSTDVG GALKKTSSEI ELQSSSLDET
ILTLSSLENI PQGTNLLSSQ DDDFLRIKVS YGEEKIRLRM RNSRRLRDLL WEIGKRFSIE
DMSRYDLKYL DEDNEWVLLT CDEDVEECVD VCRTTPSHTI KLLLQASSHH FPERSSATEY
SLWH
