NLP9_ARATH
ID NLP9_ARATH Reviewed; 894 AA.
AC Q9M1B0; Q6NQJ4;
DT 30-NOV-2010, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 25-MAY-2022, entry version 104.
DE RecName: Full=Protein NLP9;
DE Short=AtNLP9;
DE AltName: Full=NIN-like protein 9;
DE AltName: Full=Nodule inception protein-like protein 8;
GN Name=NLP9; OrderedLocusNames=At3g59580; ORFNames=T16L24.130;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130713; DOI=10.1038/35048706;
RA Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B.,
RA Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M.,
RA Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V.,
RA Choisne N., Artiguenave F., Robert C., Brottier P., Wincker P.,
RA Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H.,
RA Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H.,
RA Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A.,
RA Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H.,
RA Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J.,
RA Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B.,
RA Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D.,
RA de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E.,
RA Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G.,
RA Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X.,
RA Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M.,
RA Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B.,
RA Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J.,
RA Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C.,
RA Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y.,
RA Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K.,
RA Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A.,
RA Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T.,
RA Watanabe A., Yamada M., Yasuda M., Tabata S.;
RT "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.";
RL Nature 408:820-822(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (MAR-2005) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=15785851; DOI=10.1007/s00239-004-0144-2;
RA Schauser L., Wieloch W., Stougaard J.;
RT "Evolution of NIN-like proteins in Arabidopsis, rice, and Lotus
RT japonicus.";
RL J. Mol. Evol. 60:229-237(2005).
CC -!- FUNCTION: Probable transcription factor. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00852}.
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DR EMBL; AL138659; CAB75455.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE79941.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE79942.1; -; Genomic_DNA.
DR EMBL; CP002686; ANM65151.1; -; Genomic_DNA.
DR EMBL; BT010459; AAQ62879.1; -; mRNA.
DR EMBL; AK220674; BAD93722.1; -; mRNA.
DR PIR; T49299; T49299.
DR RefSeq; NP_001030895.1; NM_001035818.3.
DR RefSeq; NP_001327143.1; NM_001339989.1.
DR RefSeq; NP_191517.1; NM_115820.4.
DR AlphaFoldDB; Q9M1B0; -.
DR SMR; Q9M1B0; -.
DR STRING; 3702.AT3G59580.2; -.
DR PaxDb; Q9M1B0; -.
DR PRIDE; Q9M1B0; -.
DR ProteomicsDB; 251178; -.
DR EnsemblPlants; AT3G59580.1; AT3G59580.1; AT3G59580.
DR EnsemblPlants; AT3G59580.2; AT3G59580.2; AT3G59580.
DR EnsemblPlants; AT3G59580.3; AT3G59580.3; AT3G59580.
DR GeneID; 825127; -.
DR Gramene; AT3G59580.1; AT3G59580.1; AT3G59580.
DR Gramene; AT3G59580.2; AT3G59580.2; AT3G59580.
DR Gramene; AT3G59580.3; AT3G59580.3; AT3G59580.
DR KEGG; ath:AT3G59580; -.
DR Araport; AT3G59580; -.
DR TAIR; locus:2097588; AT3G59580.
DR eggNOG; ENOG502QQ6H; Eukaryota.
DR HOGENOM; CLU_008971_0_0_1; -.
DR InParanoid; Q9M1B0; -.
DR OMA; FLHACMG; -.
DR OrthoDB; 100342at2759; -.
DR PhylomeDB; Q9M1B0; -.
DR PRO; PR:Q9M1B0; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q9M1B0; baseline and differential.
DR Genevisible; Q9M1B0; AT.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; ISS:TAIR.
DR CDD; cd06407; PB1_NLP; 1.
DR InterPro; IPR045012; NLP.
DR InterPro; IPR000270; PB1_dom.
DR InterPro; IPR034891; PB1_NLP.
DR InterPro; IPR003035; RWP-RK_dom.
DR PANTHER; PTHR32002; PTHR32002; 1.
DR Pfam; PF00564; PB1; 1.
DR Pfam; PF02042; RWP-RK; 1.
DR SMART; SM00666; PB1; 1.
DR PROSITE; PS51745; PB1; 1.
DR PROSITE; PS51519; RWP_RK; 1.
PE 2: Evidence at transcript level;
KW Coiled coil; DNA-binding; Nucleus; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..894
FT /note="Protein NLP9"
FT /id="PRO_0000401494"
FT DOMAIN 517..603
FT /note="RWP-RK"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00852"
FT DOMAIN 792..875
FT /note="PB1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01081"
FT REGION 732..763
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 578..598
FT /evidence="ECO:0000255"
FT COMPBIAS 738..763
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CONFLICT 345
FT /note="F -> L (in Ref. 3; AAQ62879 and 4; BAD93722)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 894 AA; 98713 MW; 18336F3395A98348 CRC64;
MENPSASRDN KGFCFPDIPV EEMDGWVKNL ISEEDMFSSS STSELMNFES FASWCNSPSA
ADILFTQYGL STSQSIIPFG GLEGSYACEK RPLDCTSVPR SLSHSLDEKM LKALSLFMEF
SGEGILAQFW TPIKTGDQYM LSTCDQAYLL DSRLSGYREA SRRFTFSAEA NQCSYPGLPG
RVFISGVPEW TSNVMYYKTA EYLRMKHALD NEVRGSIAIP VLEASGSSCC AVLELVTCRE
KPNFDVEMNS VCRALQAVNL QTSTIPRRQY LSSNQKEALA EIRDVLRAVC YAHRLPLALA
WIPCSYSKGA NDELVKVYGK NSKECSLLCI EETSCYVNDM EMEGFVNACL EHYLREGQGI
VGKALISNKP SFSSDVKTFD ICEYPLVQHA RKFGLNAAVA TKLRSTFTGD NDYILEFFLP
VSMKGSSEQQ LLLDSLSGTM QRLCRTLKTV SDAESIDGTE FGSRSVEMTN LPQATVSVGS
FHTTFLDTDV NSTRSTFSNI SSNKRNEMAG SQGTLQQEIS GARRLEKKKS STEKNVSLNV
LQQYFSGSLK DAAKSLGVCP TTLKRICRQH GIMRWPSRKI NKVNRSLRKI QTVLDSVQGV
EGGLKFDSVT GEFVAVGPFI QEFGTQKSLS SHDEDALARS QGDMDEDVSV EPLEVKSHDG
GGVKLEEDVE TNHQAGPGSL KKPWTWISKQ SGLIYSDDTD IGKRSEEVNK DKEDLCVRRC
LSSVALAGDG MNTRIERGNG TVEPNHSISS SMSDSSNSSG AVLLGSSSAS LEQNWNQIRT
HNNSGESGSS STLTVKATYR EDTVRFKLDP YVVGCSQLYR EVAKRFKLQE GAFQLKYLDD
EEEWVMLVTD SDLHECFEIL NGMRKHTVKF LVRDIPNTAM GSSAGSNGYL GTGT
