NLTL1_ORYSJ
ID NLTL1_ORYSJ Reviewed; 178 AA.
AC Q6ASY2; A0A0P0VYZ1;
DT 05-OCT-2010, integrated into UniProtKB/Swiss-Prot.
DT 13-SEP-2004, sequence version 1.
DT 03-AUG-2022, entry version 94.
DE RecName: Full=Non-specific lipid transfer protein-like 1;
DE Short=OsLTPL1;
DE Flags: Precursor;
GN Name=LTPL1; OrderedLocusNames=Os03g0385400, LOC_Os03g26820;
GN ORFNames=B1246D11.7;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA], PROTEIN SEQUENCE OF 27-38 AND 120-134, AND
RP TISSUE SPECIFICITY.
RC STRAIN=cv. Koshihikari; TISSUE=Aleurone;
RX PubMed=15653800; DOI=10.1093/pcp/pch208;
RA Mashiguchi K., Yamaguchi I., Suzuki Y.;
RT "Isolation and identification of glycosylphosphatidylinositol-anchored
RT arabinogalactan proteins and novel beta-glucosyl Yariv-reactive proteins
RT from seeds of rice (Oryza sativa).";
RL Plant Cell Physiol. 45:1817-1829(2004).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16109971; DOI=10.1101/gr.3869505;
RG The rice chromosome 3 sequencing consortium;
RA Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B.,
RA Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T.,
RA Fadrosh D., Bera J., Weaver B., Jin S., Johri S., Reardon M., Webb K.,
RA Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T.,
RA Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R.,
RA Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., Rambo T., Currie J.,
RA Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S.S.,
RA Luo M., Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M.,
RA Pries G., Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M.,
RA Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L.,
RA O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R.,
RA Jin W., Lee H.R., Jiang J., Jackson S.;
RT "Sequence, annotation, and analysis of synteny between rice chromosome 3
RT and diverged grass species.";
RL Genome Res. 15:1284-1291(2005).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [5]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
CC -!- SUBCELLULAR LOCATION: Vacuole, aleurone grain membrane {ECO:0000305};
CC Lipid-anchor, GPI-anchor {ECO:0000305}.
CC -!- TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and
CC seeds. {ECO:0000269|PubMed:15653800}.
CC -!- PTM: O-glycosylated on hydroxyprolines; noncontiguous hydroxylproline
CC residues are glycosylated with arabinogalactan. {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the plant LTP family. {ECO:0000305}.
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DR EMBL; EU282465; ABX83037.1; -; mRNA.
DR EMBL; AC146521; AAT85306.1; -; Genomic_DNA.
DR EMBL; DP000009; ABF96304.1; -; Genomic_DNA.
DR EMBL; AP008209; BAF12166.1; -; Genomic_DNA.
DR EMBL; AP014959; BAS84470.1; -; Genomic_DNA.
DR EMBL; AK068223; BAG90809.1; -; mRNA.
DR EMBL; AK070241; BAG91850.1; -; mRNA.
DR RefSeq; XP_015633082.1; XM_015777596.1.
DR AlphaFoldDB; Q6ASY2; -.
DR PaxDb; Q6ASY2; -.
DR PRIDE; Q6ASY2; -.
DR EnsemblPlants; Os03t0385400-01; Os03t0385400-01; Os03g0385400.
DR GeneID; 4332993; -.
DR Gramene; Os03t0385400-01; Os03t0385400-01; Os03g0385400.
DR KEGG; osa:4332993; -.
DR eggNOG; ENOG502R3GD; Eukaryota.
DR HOGENOM; CLU_089796_5_2_1; -.
DR InParanoid; Q6ASY2; -.
DR OMA; KCLAPAP; -.
DR OrthoDB; 1614569at2759; -.
DR Proteomes; UP000000763; Chromosome 3.
DR Proteomes; UP000059680; Chromosome 3.
DR Genevisible; Q6ASY2; OS.
DR GO; GO:0032578; C:aleurone grain membrane; IDA:UniProtKB.
DR GO; GO:0031225; C:anchored component of membrane; IEA:UniProtKB-KW.
DR GO; GO:0005773; C:vacuole; IEA:UniProtKB-KW.
DR GO; GO:0008289; F:lipid binding; IEA:UniProtKB-KW.
DR GO; GO:0008233; F:peptidase activity; IEA:UniProtKB-KW.
DR GO; GO:0006508; P:proteolysis; IEA:UniProtKB-KW.
DR Gene3D; 1.10.110.10; -; 1.
DR InterPro; IPR036312; Bifun_inhib/LTP/seed_sf.
DR InterPro; IPR016140; Bifunc_inhib/LTP/seed_store.
DR InterPro; IPR043325; LTSS.
DR PANTHER; PTHR33044; PTHR33044; 1.
DR Pfam; PF14368; LTP_2; 1.
DR SUPFAM; SSF47699; SSF47699; 1.
PE 1: Evidence at protein level;
KW Direct protein sequencing; Disulfide bond; Glycoprotein; GPI-anchor;
KW Hydrolase; Hydroxylation; Lipid-binding; Lipoprotein; Membrane; Protease;
KW Proteoglycan; Reference proteome; Signal; Vacuole.
FT SIGNAL 1..26
FT /evidence="ECO:0000269|PubMed:15653800"
FT CHAIN 27..149
FT /note="Non-specific lipid transfer protein-like 1"
FT /id="PRO_0000397898"
FT PROPEP 150..178
FT /note="Removed in mature form"
FT /evidence="ECO:0000255"
FT /id="PRO_0000397899"
FT LIPID 149
FT /note="GPI-anchor amidated alanine"
FT /evidence="ECO:0000255"
FT CARBOHYD 99
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
FT DISULFID 50..68
FT /evidence="ECO:0000255"
FT DISULFID 69..110
FT /evidence="ECO:0000255"
SQ SEQUENCE 178 AA; 16899 MW; D1F60224FF88B7B7 CRC64;
MAVAARAAAV ACLLVVGLAA VAGVDGATAS SPAPAPAVDC TAEALKLADC LDYVTPGKTA
PSRPSKLCCG EVKGALKDSA AVGCLCAAFT SKTLPLPINI TRALHLPAAC GADASAFSKC
LAPAPSPSVA PGTSSGSGGA AAAPAKGAAA ARSPMASTTA VLVVAAAVAA PLLAFFHF
