NMCPA_ORYSJ
ID NMCPA_ORYSJ Reviewed; 1155 AA.
AC Q0DY81; A0A0P0VNU0; Q7XXP7;
DT 07-APR-2021, integrated into UniProtKB/Swiss-Prot.
DT 26-FEB-2020, sequence version 1.
DT 25-MAY-2022, entry version 8.
DE RecName: Full=Nuclear matrix constituent protein 1a {ECO:0000303|PubMed:15659629};
DE Short=OsNMCP1a {ECO:0000303|PubMed:15659629};
GN Name=NMCP1A {ECO:0000303|PubMed:15659629};
GN OrderedLocusNames=Os02g0709900 {ECO:0000312|EMBL:BAF09807.1},
GN LOC_Os02g48010 {ECO:0000305};
GN ORFNames=OJ1311_H06.10-1 {ECO:0000312|EMBL:BAD07765.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA], AND SUBCELLULAR LOCATION.
RC TISSUE=Panicle;
RX PubMed=15659629; DOI=10.1105/tpc.104.028456;
RA Moriguchi K., Suzuki T., Ito Y., Yamazaki Y., Niwa Y., Kurata N.;
RT "Functional isolation of novel nuclear proteins showing a variety of
RT subnuclear localizations.";
RL Plant Cell 17:389-403(2005).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
CC -!- FUNCTION: Architectural component of nuclear structure that plays
CC different roles in controlling nuclear size and morphology.
CC {ECO:0000250|UniProtKB:Q0JJ05}.
CC -!- SUBCELLULAR LOCATION: Nucleus matrix {ECO:0000269|PubMed:15659629}.
CC Nucleus lamina {ECO:0000269|PubMed:15659629}. Note=Forms aggregated
CC foci in the inner nuclear matrix region (PubMed:15659629). Localizes in
CC the nuclear periphery (PubMed:15659629). {ECO:0000269|PubMed:15659629}.
CC -!- SIMILARITY: Belongs to the CRWN family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAS80554.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AB110204; BAC78596.1; -; mRNA.
DR EMBL; AP004161; BAD07765.1; -; Genomic_DNA.
DR EMBL; AP008208; BAF09807.1; -; Genomic_DNA.
DR EMBL; AP014958; BAS80554.1; ALT_SEQ; Genomic_DNA.
DR RefSeq; XP_015625722.1; XM_015770236.1.
DR AlphaFoldDB; Q0DY81; -.
DR SMR; Q0DY81; -.
DR GeneID; 4330487; -.
DR KEGG; osa:4330487; -.
DR HOGENOM; CLU_1590653_0_0_1; -.
DR OrthoDB; 162808at2759; -.
DR Proteomes; UP000000763; Chromosome 2.
DR Proteomes; UP000059680; Chromosome 2.
DR GO; GO:0005652; C:nuclear lamina; IDA:UniProtKB.
DR GO; GO:0016363; C:nuclear matrix; IDA:UniProtKB.
DR GO; GO:0006997; P:nucleus organization; IEA:InterPro.
DR InterPro; IPR040418; CRWN.
DR PANTHER; PTHR31908; PTHR31908; 1.
PE 2: Evidence at transcript level;
KW Coiled coil; Nucleus; Reference proteome.
FT CHAIN 1..1155
FT /note="Nuclear matrix constituent protein 1a"
FT /id="PRO_0000452399"
FT REGION 1..36
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 293..315
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 910..934
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 953..1155
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 120..316
FT /evidence="ECO:0000255"
FT COILED 372..704
FT /evidence="ECO:0000255"
FT COMPBIAS 1..20
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 976..998
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1042..1060
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1061..1081
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1155 AA; 132331 MW; 519E7996A4386F82 CRC64;
MFTPQGKGWT GWSTPAPANQ RSGGGAPAAS APLGKGKGTT LRVAELEQEL HEYQYNMGLL
LIEKKEWTAK LDEINQALTQ KEEILKREQA AHLNAISEYE RREESMRKAL GVEKQCVTDL
EKALREIRGE IAEVKFMSEK KITDAQSLEA SLEEKRLEIE GKLHAADAKL AEANRKKSQA
DRDLEEVEAR QRRLEKEKLY FENERKAGED RIKRQEDSLR DWDKKLKESQ NRILDLQRSL
NDREERANEN DKLFKIKQEE LEEAKKALEH TKATLKIKED DINKRLAELH LQEKEAESKN
RKLEEREKKI AEREEKVSAR EKVGLQKLLE DHNVKLESKR RDFDLQLENE KKSFDAMLVQ
KEADLVQREK DVRSSEEKLS KKEQVLNESK KKLEEWQNDL DTKSNALKKW EESLQNDEKQ
LSEQKLQIEN ERKQAEMYKL ELESLKATVV AEKEKILQEQ NNLKLTEEER QEHIMLTAQL
KKEIDEYRMR SNSLSEETED LRKQRQKFEE EWEQLDEKRT HLEEEAKKLN NEKKNLERWH
DNEEKRLKDR EDELDIKYKE QGENLALKEK SLIDNIDHQR LENEELLKRE RADLQRNLQL
HRHELEMEME KKQASKEREL EEKENELNRK MDFVENELKR AAELNESKIQ KILLEKKQLQ
KEKEVLVEDR QKLETDKADI RRDIDSLNTL SKSLKERREA YNRDRNNLID IFEKYKVCKN
CGVIIFEGLD ALALKDSTDI EYPSLAVEAD DRSPNPDTLA QETGALVNSG GRLSLLQKCS
RIFKFSPRKK AEQSSEQQAV KNTDFGARLE EASQSDDDYE PTPVYQVAYN SFDAEDLPSE
SGAFENEESE RQDIADDVQM ESSLGVADNC VDIHGTQSFD GNTDMVVDTT IVDVDQNGKD
SAVLPVVDLE PETSKQGRRQ QNRKGRAKGG VKRTRSVLAV VEDAKEILGE NLEVKKDDGQ
GDSVTVGGTR KRRFAGATIS EQDEDSEAHS ESVSLGGQRR KRRQTAAAVT QAPGEKRYNL
RRTTVANAAT AAQTNKKKAA KKGSKQTVEA TADDTEGTSK AEEPATGSKG ASQSADDASQ
LPEYSQAEAG DTHGPVEVTS AEGVDIVDGI DAAPDAMPMT PSGSELGAEQ DDEEDDDSER
RNQSIGKKLW SFFTT
