NMCPB_ORYSJ
ID NMCPB_ORYSJ Reviewed; 987 AA.
AC Q0JJ05; A0A0P0V8N9; Q8LIX8;
DT 07-APR-2021, integrated into UniProtKB/Swiss-Prot.
DT 26-FEB-2020, sequence version 1.
DT 25-MAY-2022, entry version 8.
DE RecName: Full=Nuclear matrix constituent protein 1b {ECO:0000303|PubMed:15659629};
DE Short=OsNMCP1b {ECO:0000303|PubMed:15659629};
DE AltName: Full=Nuclear matrix constituent protein 1 {ECO:0000303|PubMed:32129897};
DE Short=OsNMCP1 {ECO:0000303|PubMed:32129897};
GN Name=NMCP1B {ECO:0000303|PubMed:15659629};
GN Synonyms=NMCP1 {ECO:0000303|PubMed:32129897};
GN OrderedLocusNames=Os01g0767000 {ECO:0000312|EMBL:BAF06273.1},
GN LOC_Os01g56140 {ECO:0000305};
GN ORFNames=B1143G03.1 {ECO:0000312|EMBL:BAD53323.1},
GN OsJ_03582 {ECO:0000312|EMBL:EAZ13665.1},
GN OSJNBb0053G03.15 {ECO:0000312|EMBL:BAC10761.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA].
RC TISSUE=Panicle;
RX PubMed=15659629; DOI=10.1105/tpc.104.028456;
RA Moriguchi K., Suzuki T., Ito Y., Yamazaki Y., Niwa Y., Kurata N.;
RT "Functional isolation of novel nuclear proteins showing a variety of
RT subnuclear localizations.";
RL Plant Cell 17:389-403(2005).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12447438; DOI=10.1038/nature01184;
RA Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y.,
RA Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H.,
RA Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., Okamoto M.,
RA Ando T., Aoki H., Arita K., Hamada M., Harada C., Hijishita S., Honda M.,
RA Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito S., Ito T.,
RA Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Katagiri S.,
RA Kikuta A., Kobayashi N., Kono I., Machita K., Maehara T., Mizuno H.,
RA Mizubayashi T., Mukai Y., Nagasaki H., Nakashima M., Nakama Y.,
RA Nakamichi Y., Nakamura M., Namiki N., Negishi M., Ohta I., Ono N., Saji S.,
RA Sakai K., Shibata M., Shimokawa T., Shomura A., Song J., Takazaki Y.,
RA Terasawa K., Tsuji K., Waki K., Yamagata H., Yamane H., Yoshiki S.,
RA Yoshihara R., Yukawa K., Zhong H., Iwama H., Endo T., Ito H., Hahn J.H.,
RA Kim H.-I., Eun M.-Y., Yano M., Jiang J., Gojobori T.;
RT "The genome sequence and structure of rice chromosome 1.";
RL Nature 420:312-316(2002).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [5]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [7]
RP FUNCTION, INTERACTION WITH SWI3C, SUBCELLULAR LOCATION, INDUCTION, AND
RP DISRUPTION PHENOTYPE.
RX PubMed=32129897; DOI=10.1111/nph.16518;
RA Yang J., Chang Y., Qin Y., Chen D., Zhu T., Peng K., Wang H., Tang N.,
RA Li X., Wang Y., Liu Y., Li X., Xie W., Xiong L.;
RT "A lamin-like protein OsNMCP1 regulates drought resistance and root growth
RT through chromatin accessibility modulation by interacting with a chromatin
RT remodeller OsSWI3C in rice.";
RL New Phytol. 227:65-83(2020).
CC -!- FUNCTION: Architectural component of nuclear structure that plays
CC different roles in controlling nuclear size and morphology (Probable).
CC Involved in the modification of chromatin accessibility by interacting
CC with SWI3C, a component of the chromatin-remodeling complex, to thus
CC reduce the suppression effect of the complex (PubMed:32129897). Acts as
CC positive regulator of drought resistance and modulates root growth
CC (PubMed:32129897). Positively regulates the expression of genes related
CC to root growth and drought resistance (PubMed:32129897).
CC {ECO:0000269|PubMed:32129897, ECO:0000305|PubMed:32129897}.
CC -!- SUBUNIT: Interacts with SWI3C. {ECO:0000269|PubMed:32129897}.
CC -!- SUBCELLULAR LOCATION: Nucleus matrix {ECO:0000269|PubMed:32129897}.
CC Nucleus lamina {ECO:0000269|PubMed:32129897}. Note=Localizes
CC predominantly at the nuclear periphery. {ECO:0000269|PubMed:32129897}.
CC -!- INDUCTION: Induced by abscisic acid (ABA) and drought stress (at
CC protein level). {ECO:0000269|PubMed:32129897}.
CC -!- DISRUPTION PHENOTYPE: No visible phenotype under normal growth
CC conditions, but mutant plants exhibit hypersensitivity to drought
CC stress. {ECO:0000269|PubMed:32129897}.
CC -!- MISCELLANEOUS: Plants overexpressing NMCP1 exhibit enhanced tolerance
CC to drought stress. {ECO:0000269|PubMed:32129897}.
CC -!- SIMILARITY: Belongs to the CRWN family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAS74518.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AB110205; BAC78597.1; -; mRNA.
DR EMBL; AP003377; BAC10761.1; -; Genomic_DNA.
DR EMBL; AP003371; BAD53323.1; -; Genomic_DNA.
DR EMBL; AP008207; BAF06273.1; -; Genomic_DNA.
DR EMBL; AP014957; BAS74518.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CM000138; EAZ13665.1; -; Genomic_DNA.
DR RefSeq; XP_015620456.1; XM_015764970.1.
DR AlphaFoldDB; Q0JJ05; -.
DR SMR; Q0JJ05; -.
DR STRING; 4530.OS01T0767000-01; -.
DR EnsemblPlants; Os01t0767000-01; Os01t0767000-01; Os01g0767000.
DR GeneID; 4325497; -.
DR Gramene; Os01t0767000-01; Os01t0767000-01; Os01g0767000.
DR KEGG; osa:4325497; -.
DR eggNOG; ENOG502QT60; Eukaryota.
DR HOGENOM; CLU_1772894_0_0_1; -.
DR OrthoDB; 248811at2759; -.
DR Proteomes; UP000000763; Chromosome 1.
DR Proteomes; UP000007752; Chromosome 1.
DR Proteomes; UP000059680; Chromosome 1.
DR GO; GO:0005652; C:nuclear lamina; IDA:UniProtKB.
DR GO; GO:0016363; C:nuclear matrix; IDA:UniProtKB.
DR GO; GO:0006997; P:nucleus organization; IEA:InterPro.
DR GO; GO:1902584; P:positive regulation of response to water deprivation; IMP:UniProtKB.
DR GO; GO:0040008; P:regulation of growth; IEA:UniProtKB-KW.
DR GO; GO:2000280; P:regulation of root development; IMP:UniProtKB.
DR InterPro; IPR040418; CRWN.
DR PANTHER; PTHR31908; PTHR31908; 1.
PE 1: Evidence at protein level;
KW Coiled coil; Growth regulation; Nucleus; Reference proteome;
KW Stress response.
FT CHAIN 1..987
FT /note="Nuclear matrix constituent protein 1b"
FT /id="PRO_0000452400"
FT REGION 1..25
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 752..775
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 887..987
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 403..545
FT /evidence="ECO:0000255"
FT COILED 594..717
FT /evidence="ECO:0000255"
FT COMPBIAS 752..772
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 887..909
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 930..956
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 957..972
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 987 AA; 113614 MW; 2405786C816E6840 CRC64;
MASPRSAGGV GGGGGGGGGS GGAAAGDDAI WSKLREAGFD EESLKRRDKA ALIAYISRLE
SEIYQYQHNL GLVLMERKEL TSKHEQLRAA SESAEIMHKR ERAAQQSALA EARKKEENLK
KSLGIQKECV ANLEKALHDM RGETAETKVS YESKLAEALQ LMEAAHKKFD EAEEKLLLAK
SLEAESIRTH NAALRSLHDI DDREDQLRRD RISCELENEA KEKEISLQRK SLNDMKKILH
EKEEVLLKEQ ALLNQRDENI LERLAYVTHS EKRVEEEKNI LEAERKVLLE EKYKLELKME
AIVSREEALI QKESLLDKRE SELLILQETI ASKERAEIER LNQEQAIALE RRKHDFESEM
ANKQMSFDAA MEVTRNALHQ RECALSEQES VVVQRSQNLD LQLAELASKE KALAGRSDEL
KEEEEKLLLH REAIHNELQK EREEIQRIKS DLEKEKAFFE EEKREAIQAQ QDLAITQADR
DELLTLQMKL KEEIDSLRAQ KRELMADADR LQAEKERFEI EWELIDEKKE ELQKEAIRIA
EERRAITEYL KNESDIIKQE KDNLRVQFKS NSETLSREHK EFMSKMQQEH ASWLSKIQQE
RQDLKRDIDI QRVELLNSAK ARQMEIDSYL REREEEFEQK KAKELEHINS QKEMINTKLE
HVAVELQKLK DERKEATLER ERREQELSEI KGTIEALNNQ REKLQEQRKL LHSDREAITV
QIQQLNVLEE LKIDSENKQL SLLQHDKSKL GSDINVKDNH HDNSHSSPKQ RFGRKLDLSP
VSTPISWVRK CAQVIFKRSP EKSASHDQFV QNGVPKKVGD SVDVEDVNLD FAKVGQKRLN
HLVSCDQTEV LEPKRKHRRS TIQKVNGGEI TSNCLSALEE KCSKNEHDEA PLGLSNTCKE
HEYGDKGPEN LTKPGEPASS VDVPYVNGIV DNSDSVQEEP SVEATVSATE TSNVDGPEDN
NDSDEEDEEE EEEKTSSAKK LWRFLIT
