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NNR_DICTD
ID   NNR_DICTD               Reviewed;         514 AA.
AC   B8E2P6;
DT   21-MAR-2012, integrated into UniProtKB/Swiss-Prot.
DT   03-MAR-2009, sequence version 1.
DT   03-AUG-2022, entry version 65.
DE   RecName: Full=Bifunctional NAD(P)H-hydrate repair enzyme Nnr;
DE   AltName: Full=Nicotinamide nucleotide repair protein;
DE   Includes:
DE     RecName: Full=ADP-dependent (S)-NAD(P)H-hydrate dehydratase;
DE              EC=4.2.1.136;
DE     AltName: Full=ADP-dependent NAD(P)HX dehydratase;
DE   Includes:
DE     RecName: Full=NAD(P)H-hydrate epimerase;
DE              EC=5.1.99.6;
DE     AltName: Full=NAD(P)HX epimerase;
GN   Name=nnr; OrderedLocusNames=Dtur_1617;
OS   Dictyoglomus turgidum (strain DSM 6724 / Z-1310).
OC   Bacteria; Dictyoglomi; Dictyoglomales; Dictyoglomaceae; Dictyoglomus.
OX   NCBI_TaxID=515635;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=DSM 6724 / Z-1310;
RX   PubMed=28066333; DOI=10.3389/fmicb.2016.01979;
RA   Brumm P.J., Gowda K., Robb F.T., Mead D.A.;
RT   "The complete genome sequence of hyperthermophile Dictyoglomus turgidum DSM
RT   6724 reveals a specialized carbohydrate fermentor.";
RL   Front. Microbiol. 7:1979-1979(2016).
CC   -!- FUNCTION: Bifunctional enzyme that catalyzes the epimerization of the
CC       S- and R-forms of NAD(P)HX and the dehydration of the S-form of
CC       NAD(P)HX at the expense of ADP, which is converted to AMP. This allows
CC       the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that
CC       is a result of enzymatic or heat-dependent hydration (By similarity).
CC       {ECO:0000250}.
CC   -!- CATALYTIC ACTIVITY:
CC       Reaction=(6S)-NADHX + ADP = AMP + H(+) + NADH + phosphate;
CC         Xref=Rhea:RHEA:32223, ChEBI:CHEBI:15378, ChEBI:CHEBI:43474,
CC         ChEBI:CHEBI:57945, ChEBI:CHEBI:64074, ChEBI:CHEBI:456215,
CC         ChEBI:CHEBI:456216; EC=4.2.1.136;
CC   -!- CATALYTIC ACTIVITY:
CC       Reaction=(6S)-NADPHX + ADP = AMP + H(+) + NADPH + phosphate;
CC         Xref=Rhea:RHEA:32235, ChEBI:CHEBI:15378, ChEBI:CHEBI:43474,
CC         ChEBI:CHEBI:57783, ChEBI:CHEBI:64076, ChEBI:CHEBI:456215,
CC         ChEBI:CHEBI:456216; EC=4.2.1.136;
CC   -!- CATALYTIC ACTIVITY:
CC       Reaction=(6R)-NADHX = (6S)-NADHX; Xref=Rhea:RHEA:32215,
CC         ChEBI:CHEBI:64074, ChEBI:CHEBI:64075; EC=5.1.99.6;
CC   -!- CATALYTIC ACTIVITY:
CC       Reaction=(6R)-NADPHX = (6S)-NADPHX; Xref=Rhea:RHEA:32227,
CC         ChEBI:CHEBI:64076, ChEBI:CHEBI:64077; EC=5.1.99.6;
CC   -!- COFACTOR:
CC       Name=K(+); Xref=ChEBI:CHEBI:29103; Evidence={ECO:0000250};
CC       Note=Binds 1 potassium ion per subunit. {ECO:0000250};
CC   -!- SIMILARITY: In the N-terminal section; belongs to the NnrE/AIBP family.
CC       {ECO:0000305}.
CC   -!- SIMILARITY: In the C-terminal section; belongs to the NnrD/CARKD
CC       family. {ECO:0000305}.
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DR   EMBL; CP001251; ACK42890.1; -; Genomic_DNA.
DR   RefSeq; WP_012583965.1; NC_011661.1.
DR   RefSeq; YP_002353504.1; NC_011661.1.
DR   AlphaFoldDB; B8E2P6; -.
DR   SMR; B8E2P6; -.
DR   STRING; 515635.Dtur_1617; -.
DR   PRIDE; B8E2P6; -.
DR   EnsemblBacteria; ACK42890; ACK42890; Dtur_1617.
DR   KEGG; dtu:Dtur_1617; -.
DR   PATRIC; fig|515635.4.peg.1666; -.
DR   eggNOG; COG0062; Bacteria.
DR   eggNOG; COG0063; Bacteria.
DR   HOGENOM; CLU_024853_4_1_0; -.
DR   InParanoid; B8E2P6; -.
DR   OMA; HNGGDAL; -.
DR   OrthoDB; 1748633at2; -.
DR   Proteomes; UP000007719; Chromosome.
DR   GO; GO:0052855; F:ADP-dependent NAD(P)H-hydrate dehydratase activity; IBA:GO_Central.
DR   GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR   GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR   GO; GO:0052856; F:NADHX epimerase activity; IBA:GO_Central.
DR   GO; GO:0052857; F:NADPHX epimerase activity; IBA:GO_Central.
DR   GO; GO:0110051; P:metabolite repair; IBA:GO_Central.
DR   GO; GO:0046496; P:nicotinamide nucleotide metabolic process; IEA:UniProtKB-UniRule.
DR   CDD; cd01171; YXKO-related; 1.
DR   Gene3D; 3.40.1190.20; -; 1.
DR   Gene3D; 3.40.50.10260; -; 1.
DR   HAMAP; MF_01965; NADHX_dehydratase; 1.
DR   HAMAP; MF_01966; NADHX_epimerase; 1.
DR   InterPro; IPR017953; Carbohydrate_kinase_pred_CS.
DR   InterPro; IPR000631; CARKD.
DR   InterPro; IPR030677; Nnr.
DR   InterPro; IPR029056; Ribokinase-like.
DR   InterPro; IPR004443; YjeF_N_dom.
DR   InterPro; IPR036652; YjeF_N_dom_sf.
DR   Pfam; PF01256; Carb_kinase; 1.
DR   Pfam; PF03853; YjeF_N; 1.
DR   PIRSF; PIRSF017184; Nnr; 1.
DR   SUPFAM; SSF53613; SSF53613; 1.
DR   SUPFAM; SSF64153; SSF64153; 1.
DR   TIGRFAMs; TIGR00196; yjeF_cterm; 1.
DR   TIGRFAMs; TIGR00197; yjeF_nterm; 1.
DR   PROSITE; PS01050; YJEF_C_2; 1.
DR   PROSITE; PS51383; YJEF_C_3; 1.
DR   PROSITE; PS51385; YJEF_N; 1.
PE   3: Inferred from homology;
KW   ATP-binding; Isomerase; Lyase; Metal-binding; Multifunctional enzyme; NAD;
KW   NADP; Nucleotide-binding; Potassium; Reference proteome.
FT   CHAIN           1..514
FT                   /note="Bifunctional NAD(P)H-hydrate repair enzyme Nnr"
FT                   /id="PRO_0000416417"
FT   DOMAIN          9..215
FT                   /note="YjeF N-terminal"
FT   DOMAIN          226..508
FT                   /note="YjeF C-terminal"
FT   REGION          1..218
FT                   /note="NAD(P)H-hydrate epimerase"
FT                   /evidence="ECO:0000250"
FT   REGION          59..63
FT                   /note="NADPHX 1; for epimerase activity"
FT                   /evidence="ECO:0000250"
FT   REGION          129..135
FT                   /note="NADPHX 1; for epimerase activity"
FT                   /evidence="ECO:0000250"
FT   REGION          226..514
FT                   /note="ADP-dependent (S)-NAD(P)H-hydrate dehydratase"
FT                   /evidence="ECO:0000250"
FT   REGION          382..388
FT                   /note="NADPHX 2; for dehydratase activity"
FT                   /evidence="ECO:0000250"
FT   BINDING         60
FT                   /ligand="K(+)"
FT                   /ligand_id="ChEBI:CHEBI:29103"
FT                   /evidence="ECO:0000250"
FT   BINDING         125
FT                   /ligand="K(+)"
FT                   /ligand_id="ChEBI:CHEBI:29103"
FT                   /evidence="ECO:0000250"
FT   BINDING         158
FT                   /ligand="(6S)-NADPHX"
FT                   /ligand_id="ChEBI:CHEBI:64076"
FT                   /ligand_label="1"
FT                   /ligand_note="for epimerase activity"
FT                   /evidence="ECO:0000250"
FT   BINDING         161
FT                   /ligand="K(+)"
FT                   /ligand_id="ChEBI:CHEBI:29103"
FT                   /evidence="ECO:0000250"
FT   BINDING         333
FT                   /ligand="(6S)-NADPHX"
FT                   /ligand_id="ChEBI:CHEBI:64076"
FT                   /ligand_label="2"
FT                   /ligand_note="for dehydratase activity"
FT                   /evidence="ECO:0000250"
FT   BINDING         419..423
FT                   /ligand="ADP"
FT                   /ligand_id="ChEBI:CHEBI:456216"
FT                   /evidence="ECO:0000250"
FT   BINDING         439..448
FT                   /ligand="ADP"
FT                   /ligand_id="ChEBI:CHEBI:456216"
FT                   /evidence="ECO:0000250"
FT   BINDING         449
FT                   /ligand="(6S)-NADPHX"
FT                   /ligand_id="ChEBI:CHEBI:64076"
FT                   /ligand_label="2"
FT                   /ligand_note="for dehydratase activity"
FT                   /evidence="ECO:0000250"
SQ   SEQUENCE   514 AA;  57287 MW;  77E4620963E45769 CRC64;
     MKLVTSEEIK RLEERLEREY SIPPILLMEN AASFLFSFLK EKFEDIENRK IAILCGPGNN
     GGDGVALARY LYSNGIRKIT IFSYLWGKKI SDLLKIQLGL LKNLVEIKDI LQDYTELKEY
     ELIVDGIFGI GLKREIDDDL KKIFRYINNL GKKIISIDIP SGINSDTGEI MGEALRADYV
     LTMFLPKVGL FETGAVDYVG EVIVGRLGIP IEIVNDIVES NIHLVDWELL KDIVRIPSKG
     VHKGKKGKVL IIGGSFRYTG APILSALSAL RTGAGMVYLA VPEKISMVYR GNYPEIIYIP
     LKDKDGYISY DNLGYILEII ETYGIEAVAI GPGIGINEDV RRLVQDFLRK VDKKVVVDAD
     ALSFVKDILG DISGKDVVFT PHYGEMSRIV EESVETISKK RVEIGRNFVE RYKLNLIIKG
     PNSLFFDPKN HVYVNPFADF LLATAGSGDV LTGIIAGFSA QGYSLKEACI LGNFVHGYSS
     VIWKKYKGSV GLTASDIIKI LPLAIDEVIR RRNV
 
 
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