NOH1_ORYSJ
ID NOH1_ORYSJ Reviewed; 507 AA.
AC Q5VRW2; A0A0P0UYW1; Q0JQ81;
DT 12-APR-2017, integrated into UniProtKB/Swiss-Prot.
DT 12-APR-2017, sequence version 2.
DT 03-AUG-2022, entry version 129.
DE RecName: Full=Transcription factor NIGTH1 {ECO:0000305};
DE AltName: Full=MYB-domain transcription factor NIGT1 homolog 1 {ECO:0000305};
GN Name=NHO1 {ECO:0000305};
GN OrderedLocusNames=Os01g0176700 {ECO:0000312|EMBL:BAF04097.2},
GN LOC_Os01g08160 {ECO:0000305};
GN ORFNames=P0013F10.17 {ECO:0000312|EMBL:BAD67813.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12447438; DOI=10.1038/nature01184;
RA Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y.,
RA Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H.,
RA Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., Okamoto M.,
RA Ando T., Aoki H., Arita K., Hamada M., Harada C., Hijishita S., Honda M.,
RA Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito S., Ito T.,
RA Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Katagiri S.,
RA Kikuta A., Kobayashi N., Kono I., Machita K., Maehara T., Mizuno H.,
RA Mizubayashi T., Mukai Y., Nagasaki H., Nakashima M., Nakama Y.,
RA Nakamichi Y., Nakamura M., Namiki N., Negishi M., Ohta I., Ono N., Saji S.,
RA Sakai K., Shibata M., Shimokawa T., Shomura A., Song J., Takazaki Y.,
RA Terasawa K., Tsuji K., Waki K., Yamagata H., Yamane H., Yoshiki S.,
RA Yoshihara R., Yukawa K., Zhong H., Iwama H., Endo T., Ito H., Hahn J.H.,
RA Kim H.-I., Eun M.-Y., Yano M., Jiang J., Gojobori T.;
RT "The genome sequence and structure of rice chromosome 1.";
RL Nature 420:312-316(2002).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP INTERACTION WITH ACA5.
RX PubMed=24992889; DOI=10.1016/j.plaphy.2014.06.007;
RA Kamrul Huda K.M., Akhter Banu M.S., Yadav S., Sahoo R.K., Tuteja R.,
RA Tuteja N.;
RT "Salinity and drought tolerant OsACA6 enhances cold tolerance in transgenic
RT tobacco by interacting with stress-inducible proteins.";
RL Plant Physiol. Biochem. 82:229-238(2014).
CC -!- FUNCTION: Probable transcription factor that may play a role in
CC regulatory networks controlling development and metabolism.
CC {ECO:0000250|UniProtKB:Q6Z869}.
CC -!- SUBUNIT: Interacts with ACA5. {ECO:0000269|PubMed:24992889}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00625}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAD67813.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=BAF04097.2; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=BAS70684.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AP002523; BAD67813.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AP008207; BAF04097.2; ALT_SEQ; Genomic_DNA.
DR EMBL; AP014957; BAS70684.1; ALT_SEQ; Genomic_DNA.
DR RefSeq; XP_015631343.1; XM_015775857.1.
DR AlphaFoldDB; Q5VRW2; -.
DR SMR; Q5VRW2; -.
DR STRING; 4530.OS01T0176700-01; -.
DR PRIDE; Q5VRW2; -.
DR GeneID; 4326224; -.
DR KEGG; osa:4326224; -.
DR eggNOG; ENOG502QU6F; Eukaryota.
DR HOGENOM; CLU_036551_0_1_1; -.
DR InParanoid; Q5VRW2; -.
DR OrthoDB; 757958at2759; -.
DR Proteomes; UP000000763; Chromosome 1.
DR Proteomes; UP000059680; Chromosome 1.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR044787; HRS1-like.
DR InterPro; IPR017930; Myb_dom.
DR InterPro; IPR006447; Myb_dom_plants.
DR PANTHER; PTHR31003; PTHR31003; 1.
DR SUPFAM; SSF46689; SSF46689; 1.
DR TIGRFAMs; TIGR01557; myb_SHAQKYF; 1.
DR PROSITE; PS51294; HTH_MYB; 1.
PE 1: Evidence at protein level;
KW DNA-binding; Nucleus; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..507
FT /note="Transcription factor NIGTH1"
FT /id="PRO_0000439550"
FT DOMAIN 263..323
FT /note="HTH myb-type"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00625"
FT DNA_BIND 294..319
FT /note="H-T-H motif"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00625"
FT REGION 139..172
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 238..268
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 402..507
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 252..266
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 416..430
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 458..476
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 507 AA; 53022 MW; 1BE50AFB74164442 CRC64;
MASSSSDLTL DDHHHLTAVA AASGQATQKL QEFLSRLEEE RLKIDAFKRE LPLCMQLLNH
AMEAYRQQLE AYQMGSQHSA AAAAAARAPL VLEEFIPVKN IGIDVVAADK AAAAGGNSVS
SEKASWMVSA QLWNAPASAS AADTAAKGPQ TPKEHSEHHP LDTSPKLITA LDGGGGGGGA
FLPFSKDNAM GDGSAAAAAA LPELALAPAE KAADAITIAA GEVDKKPYAH DNGVVARSRE
AQNGGKPPST PSDGQAVPPP PQPHRKARRC WSPELHRRFV NALQILGGAQ VATPKQIREL
MKVDGLTNDE VKSHLQKYRL HTRRPMPSPA PPTAATPQLV VLGGIWVPPE YATQAAGPAI
YGAHPATQPH YTAAVAAQEY YHHHHHHLQH HPAAAALVHH RAVAPPPPLP PQQQLAPPYS
AKSSASARLG SPDSDGRGSG GGGGAAASGA GRDMSESIEE EGEGEEREDD DDDDEMAATN
NAHAVDGDDD NDEINTTTTT SAGAINY
