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NOOT2_MEDTR
ID   NOOT2_MEDTR             Reviewed;         492 AA.
AC   A0A072VIM5;
DT   05-DEC-2018, integrated into UniProtKB/Swiss-Prot.
DT   01-OCT-2014, sequence version 1.
DT   25-MAY-2022, entry version 41.
DE   RecName: Full=BTB/POZ domain and ankyrin repeat-containing protein NOOT2 {ECO:0000305};
DE   AltName: Full=Protein NODULE ROOT 2 {ECO:0000303|PubMed:30026291};
DE            Short=MtNOOT2 {ECO:0000303|PubMed:30026291};
GN   Name=NOOT2 {ECO:0000303|PubMed:30026291};
GN   OrderedLocusNames=MTR_1g051025 {ECO:0000312|EMBL:KEH41446.1};
OS   Medicago truncatula (Barrel medic) (Medicago tribuloides).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC   NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago.
OX   NCBI_TaxID=3880;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Jemalong A17;
RX   PubMed=22089132; DOI=10.1038/nature10625;
RA   Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B.,
RA   Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H.,
RA   Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., Cheung F.,
RA   De Mita S., Krishnakumar V., Gundlach H., Zhou S., Mudge J., Bharti A.K.,
RA   Murray J.D., Naoumkina M.A., Rosen B., Silverstein K.A.T., Tang H.,
RA   Rombauts S., Zhao P.X., Zhou P., Barbe V., Bardou P., Bechner M.,
RA   Bellec A., Berger A., Berges H., Bidwell S., Bisseling T., Choisne N.,
RA   Couloux A., Denny R., Deshpande S., Dai X., Doyle J.J., Dudez A.-M.,
RA   Farmer A.D., Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S.,
RA   Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., Humphray S.J.,
RA   Jeong D.-H., Jing Y., Jocker A., Kenton S.M., Kim D.-J., Klee K., Lai H.,
RA   Lang C., Lin S., Macmil S.L., Magdelenat G., Matthews L., McCorrison J.,
RA   Monaghan E.L., Mun J.-H., Najar F.Z., Nicholson C., Noirot C.,
RA   O'Bleness M., Paule C.R., Poulain J., Prion F., Qin B., Qu C., Retzel E.F.,
RA   Riddle C., Sallet E., Samain S., Samson N., Sanders I., Saurat O.,
RA   Scarpelli C., Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R.,
RA   Sims S., Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B.,
RA   Wang K., Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D.,
RA   White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F.,
RA   Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D.,
RA   Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.;
RT   "The Medicago genome provides insight into the evolution of rhizobial
RT   symbioses.";
RL   Nature 480:520-524(2011).
RN   [2]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Jemalong A17;
RX   PubMed=24767513; DOI=10.1186/1471-2164-15-312;
RA   Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S.,
RA   Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F.,
RA   Schwartz D.C., Town C.D.;
RT   "An improved genome release (version Mt4.0) for the model legume Medicago
RT   truncatula.";
RL   BMC Genomics 15:312-312(2014).
RN   [3]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Jemalong A17;
RX   PubMed=30397259; DOI=10.1038/s41477-018-0286-7;
RA   Pecrix Y., Staton S.E., Sallet E., Lelandais-Briere C., Moreau S.,
RA   Carrere S., Blein T., Jardinaud M.F., Latrasse D., Zouine M., Zahm M.,
RA   Kreplak J., Mayjonade B., Satge C., Perez M., Cauet S., Marande W.,
RA   Chantry-Darmon C., Lopez-Roques C., Bouchez O., Berard A., Debelle F.,
RA   Munos S., Bendahmane A., Berges H., Niebel A., Buitink J., Frugier F.,
RA   Benhamed M., Crespi M., Gouzy J., Gamas P.;
RT   "Whole-genome landscape of Medicago truncatula symbiotic genes.";
RL   Nat. Plants 4:1017-1025(2018).
RN   [4]
RP   FUNCTION, INDUCTION, AND DISRUPTION PHENOTYPE.
RX   PubMed=30026291; DOI=10.1104/pp.18.00610;
RA   Magne K., Couzigou J.M., Schiessl K., Liu S., George J., Zhukov V.,
RA   Sahl L., Boyer F., Iantcheva A., Mysore K.S., Wen J., Citerne S.,
RA   Oldroyd G.E.D., Ratet P.;
RT   "MtNODULE ROOT1 and MtNODULE ROOT2 are essential for indeterminate nodule
RT   identity.";
RL   Plant Physiol. 178:295-316(2018).
CC   -!- FUNCTION: Involved in the regulation of indeterminate nodule identity
CC       in association with NOOT1. {ECO:0000269|PubMed:30026291}.
CC   -!- INDUCTION: Induced in roots during early nodule formation.
CC       {ECO:0000269|PubMed:30026291}.
CC   -!- DISRUPTION PHENOTYPE: No visible phenotype under normal growth
CC       conditions (PubMed:30026291). The double mutants noot1 and noot2
CC       exhibit complete loss of nodule identity and develop only non-fixing
CC       root-like structures that are no longer able to host symbiotic rhizobia
CC       (PubMed:30026291). {ECO:0000269|PubMed:30026291}.
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DR   EMBL; CM001217; KEH41446.1; -; Genomic_DNA.
DR   EMBL; PSQE01000001; RHN78974.1; -; Genomic_DNA.
DR   RefSeq; XP_013467409.1; XM_013611955.1.
DR   AlphaFoldDB; A0A072VIM5; -.
DR   SMR; A0A072VIM5; -.
DR   EnsemblPlants; KEH41446; KEH41446; MTR_1g051025.
DR   GeneID; 25483282; -.
DR   Gramene; KEH41446; KEH41446; MTR_1g051025.
DR   KEGG; mtr:MTR_1g051025; -.
DR   HOGENOM; CLU_028148_0_0_1; -.
DR   OrthoDB; 651575at2759; -.
DR   Proteomes; UP000002051; Chromosome 1.
DR   Proteomes; UP000265566; Chromosome 1.
DR   GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR   GO; GO:0009864; P:induced systemic resistance, jasmonic acid mediated signaling pathway; IBA:GO_Central.
DR   GO; GO:0009877; P:nodulation; IMP:UniProtKB.
DR   GO; GO:0099402; P:plant organ development; IEA:InterPro.
DR   Gene3D; 1.25.40.20; -; 1.
DR   Gene3D; 3.30.710.10; -; 1.
DR   InterPro; IPR002110; Ankyrin_rpt.
DR   InterPro; IPR036770; Ankyrin_rpt-contain_sf.
DR   InterPro; IPR000210; BTB/POZ_dom.
DR   InterPro; IPR044284; NPR5/6.
DR   InterPro; IPR024228; NPR_central_dom.
DR   InterPro; IPR011333; SKP1/BTB/POZ_sf.
DR   PANTHER; PTHR46668; PTHR46668; 1.
DR   Pfam; PF12796; Ank_2; 1.
DR   Pfam; PF00651; BTB; 1.
DR   Pfam; PF11900; DUF3420; 1.
DR   SMART; SM00248; ANK; 2.
DR   SMART; SM00225; BTB; 1.
DR   SUPFAM; SSF48403; SSF48403; 1.
DR   SUPFAM; SSF54695; SSF54695; 1.
DR   PROSITE; PS50297; ANK_REP_REGION; 1.
DR   PROSITE; PS50088; ANK_REPEAT; 1.
DR   PROSITE; PS50097; BTB; 1.
PE   2: Evidence at transcript level;
KW   ANK repeat; Nodulation; Reference proteome; Repeat.
FT   CHAIN           1..492
FT                   /note="BTB/POZ domain and ankyrin repeat-containing protein
FT                   NOOT2"
FT                   /id="PRO_0000445728"
FT   DOMAIN          25..107
FT                   /note="BTB"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00037"
FT   REPEAT          248..277
FT                   /note="ANK 1"
FT                   /evidence="ECO:0000255"
FT   REPEAT          278..307
FT                   /note="ANK 2"
FT                   /evidence="ECO:0000255"
FT   REPEAT          312..341
FT                   /note="ANK 3"
FT                   /evidence="ECO:0000255"
FT   REGION          395..439
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          455..492
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        462..476
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   492 AA;  54118 MW;  57742FE67F6530EE CRC64;
     MSLEETLRSL SLDYLNLLIN GQAFSDVTFQ VEGRLVHAHR CILAARSLFF RKFFCGPDPP
     SGLDPIGGGS SRQPTVRPGV IPVNSVGYEV FLLLLQFLYS GQVSIVPQKH EPRPNCGERG
     CWHTHCTSAV DLALDTLAAA RYFGVEQLAL LTQKQLVSMV EKASIDDVMK VLIASRKQEM
     PQLWTTCSHL VAKSGLPPEI LAKHLSIDVV AKIEELRLKS SLARRSLMPL HHHHHHHHHH
     DFGDLEDQKI RRMRRALDSS DVELVKLMVM GEGLNLDEAL ALHYAVENCS REVVKALLEL
     GAADVNYPAG PAGKTSLHVA AEMVSPEMVA VLLDHHADPT VRTVDGVTPL DILRTLTSDF
     LFKGAVPGLN HIEPNKLRLC LELVQSAALV LSREENNASN NNNNNNNASS SAAPVYPPMS
     EDHSSSSSGN NNNNNNSIGN LNLDSRLVYL NLGATQMGGD DDNRHNNSHR EAMNRQGGHG
     CDPSMYHHSH DF
 
 
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