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NORV_ALIF1
ID   NORV_ALIF1              Reviewed;         496 AA.
AC   Q5E3W9;
DT   02-OCT-2007, integrated into UniProtKB/Swiss-Prot.
DT   15-MAR-2005, sequence version 1.
DT   03-AUG-2022, entry version 103.
DE   RecName: Full=Anaerobic nitric oxide reductase flavorubredoxin {ECO:0000255|HAMAP-Rule:MF_01312};
DE            Short=FlRd {ECO:0000255|HAMAP-Rule:MF_01312};
DE            Short=FlavoRb {ECO:0000255|HAMAP-Rule:MF_01312};
GN   Name=norV {ECO:0000255|HAMAP-Rule:MF_01312};
GN   Synonyms=flrD {ECO:0000255|HAMAP-Rule:MF_01312}; OrderedLocusNames=VF_1782;
OS   Aliivibrio fischeri (strain ATCC 700601 / ES114) (Vibrio fischeri).
OC   Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae;
OC   Aliivibrio.
OX   NCBI_TaxID=312309;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=ATCC 700601 / ES114;
RX   PubMed=15703294; DOI=10.1073/pnas.0409900102;
RA   Ruby E.G., Urbanowski M., Campbell J., Dunn A., Faini M., Gunsalus R.,
RA   Lostroh P., Lupp C., McCann J., Millikan D., Schaefer A., Stabb E.,
RA   Stevens A., Visick K., Whistler C., Greenberg E.P.;
RT   "Complete genome sequence of Vibrio fischeri: a symbiotic bacterium with
RT   pathogenic congeners.";
RL   Proc. Natl. Acad. Sci. U.S.A. 102:3004-3009(2005).
CC   -!- FUNCTION: Anaerobic nitric oxide reductase; uses NADH to detoxify
CC       nitric oxide (NO), protecting several 4Fe-4S NO-sensitive enzymes. Has
CC       at least 2 reductase partners, only one of which (NorW, flavorubredoxin
CC       reductase) has been identified. NO probably binds to the di-iron
CC       center; electrons enter from the NorW at rubredoxin and are transferred
CC       sequentially to the FMN center and the di-iron center. Also able to
CC       function as an aerobic oxygen reductase. {ECO:0000255|HAMAP-
CC       Rule:MF_01312}.
CC   -!- COFACTOR:
CC       Name=Fe cation; Xref=ChEBI:CHEBI:24875;
CC         Evidence={ECO:0000255|HAMAP-Rule:MF_01312};
CC       Note=Binds 3 Fe cations per monomer. {ECO:0000255|HAMAP-Rule:MF_01312};
CC   -!- COFACTOR:
CC       Name=FMN; Xref=ChEBI:CHEBI:58210;
CC         Evidence={ECO:0000255|HAMAP-Rule:MF_01312};
CC       Note=Binds 1 FMN per monomer. {ECO:0000255|HAMAP-Rule:MF_01312};
CC   -!- PATHWAY: Nitrogen metabolism; nitric oxide reduction.
CC       {ECO:0000255|HAMAP-Rule:MF_01312}.
CC   -!- SUBUNIT: Homotetramer. {ECO:0000255|HAMAP-Rule:MF_01312}.
CC   -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_01312}.
CC   -!- SIMILARITY: In the N-terminal section; belongs to the zinc metallo-
CC       hydrolase group 3 family. {ECO:0000255|HAMAP-Rule:MF_01312}.
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DR   EMBL; CP000020; AAW86277.1; -; Genomic_DNA.
DR   RefSeq; WP_011262314.1; NC_006840.2.
DR   RefSeq; YP_205165.1; NC_006840.2.
DR   AlphaFoldDB; Q5E3W9; -.
DR   SMR; Q5E3W9; -.
DR   STRING; 312309.VF_1782; -.
DR   EnsemblBacteria; AAW86277; AAW86277; VF_1782.
DR   KEGG; vfi:VF_1782; -.
DR   PATRIC; fig|312309.11.peg.1808; -.
DR   eggNOG; COG0426; Bacteria.
DR   eggNOG; COG1773; Bacteria.
DR   HOGENOM; CLU_017490_0_1_6; -.
DR   OMA; HVKNNIH; -.
DR   OrthoDB; 1149616at2; -.
DR   UniPathway; UPA00638; -.
DR   Proteomes; UP000000537; Chromosome I.
DR   GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR   GO; GO:0009055; F:electron transfer activity; IEA:UniProtKB-UniRule.
DR   GO; GO:0010181; F:FMN binding; IEA:InterPro.
DR   GO; GO:0005506; F:iron ion binding; IEA:InterPro.
DR   GO; GO:0016966; F:nitric oxide reductase activity; IEA:InterPro.
DR   CDD; cd00730; rubredoxin; 1.
DR   Gene3D; 3.40.50.360; -; 1.
DR   Gene3D; 3.60.15.10; -; 1.
DR   HAMAP; MF_01312; NorV; 1.
DR   InterPro; IPR023957; Anaer_NO_rdtase_flvorubredoxin.
DR   InterPro; IPR008254; Flavodoxin/NO_synth.
DR   InterPro; IPR029039; Flavoprotein-like_sf.
DR   InterPro; IPR001279; Metallo-B-lactamas.
DR   InterPro; IPR036866; RibonucZ/Hydroxyglut_hydro.
DR   InterPro; IPR024934; Rubredoxin-like_dom.
DR   InterPro; IPR024935; Rubredoxin_dom.
DR   Pfam; PF00258; Flavodoxin_1; 1.
DR   Pfam; PF00753; Lactamase_B; 1.
DR   Pfam; PF00301; Rubredoxin; 1.
DR   PRINTS; PR00163; RUBREDOXIN.
DR   SMART; SM00849; Lactamase_B; 1.
DR   SUPFAM; SSF52218; SSF52218; 1.
DR   SUPFAM; SSF56281; SSF56281; 1.
DR   PROSITE; PS50902; FLAVODOXIN_LIKE; 1.
DR   PROSITE; PS50903; RUBREDOXIN_LIKE; 1.
PE   3: Inferred from homology;
KW   Cytoplasm; Electron transport; Flavoprotein; FMN; Iron; Metal-binding;
KW   Oxidoreductase; Reference proteome; Transport.
FT   CHAIN           1..496
FT                   /note="Anaerobic nitric oxide reductase flavorubredoxin"
FT                   /id="PRO_0000305601"
FT   DOMAIN          254..393
FT                   /note="Flavodoxin-like"
FT                   /evidence="ECO:0000255|HAMAP-Rule:MF_01312"
FT   DOMAIN          444..495
FT                   /note="Rubredoxin-like"
FT                   /evidence="ECO:0000255|HAMAP-Rule:MF_01312"
FT   REGION          30..210
FT                   /note="Zinc metallo-hydrolase"
FT   BINDING         79
FT                   /ligand="Fe cation"
FT                   /ligand_id="ChEBI:CHEBI:24875"
FT                   /ligand_label="1"
FT                   /evidence="ECO:0000255|HAMAP-Rule:MF_01312"
FT   BINDING         81
FT                   /ligand="Fe cation"
FT                   /ligand_id="ChEBI:CHEBI:24875"
FT                   /ligand_label="1"
FT                   /evidence="ECO:0000255|HAMAP-Rule:MF_01312"
FT   BINDING         83
FT                   /ligand="Fe cation"
FT                   /ligand_id="ChEBI:CHEBI:24875"
FT                   /ligand_label="2"
FT                   /evidence="ECO:0000255|HAMAP-Rule:MF_01312"
FT   BINDING         147
FT                   /ligand="Fe cation"
FT                   /ligand_id="ChEBI:CHEBI:24875"
FT                   /ligand_label="1"
FT                   /evidence="ECO:0000255|HAMAP-Rule:MF_01312"
FT   BINDING         166
FT                   /ligand="Fe cation"
FT                   /ligand_id="ChEBI:CHEBI:24875"
FT                   /ligand_label="1"
FT                   /evidence="ECO:0000255|HAMAP-Rule:MF_01312"
FT   BINDING         166
FT                   /ligand="Fe cation"
FT                   /ligand_id="ChEBI:CHEBI:24875"
FT                   /ligand_label="2"
FT                   /evidence="ECO:0000255|HAMAP-Rule:MF_01312"
FT   BINDING         227
FT                   /ligand="Fe cation"
FT                   /ligand_id="ChEBI:CHEBI:24875"
FT                   /ligand_label="2"
FT                   /evidence="ECO:0000255|HAMAP-Rule:MF_01312"
FT   BINDING         260..264
FT                   /ligand="FMN"
FT                   /ligand_id="ChEBI:CHEBI:58210"
FT                   /evidence="ECO:0000255|HAMAP-Rule:MF_01312"
FT   BINDING         342..369
FT                   /ligand="FMN"
FT                   /ligand_id="ChEBI:CHEBI:58210"
FT                   /evidence="ECO:0000255|HAMAP-Rule:MF_01312"
FT   BINDING         449
FT                   /ligand="Fe cation"
FT                   /ligand_id="ChEBI:CHEBI:24875"
FT                   /ligand_label="3"
FT                   /evidence="ECO:0000255|HAMAP-Rule:MF_01312"
FT   BINDING         452
FT                   /ligand="Fe cation"
FT                   /ligand_id="ChEBI:CHEBI:24875"
FT                   /ligand_label="3"
FT                   /evidence="ECO:0000255|HAMAP-Rule:MF_01312"
FT   BINDING         482
FT                   /ligand="Fe cation"
FT                   /ligand_id="ChEBI:CHEBI:24875"
FT                   /ligand_label="3"
FT                   /evidence="ECO:0000255|HAMAP-Rule:MF_01312"
FT   BINDING         485
FT                   /ligand="Fe cation"
FT                   /ligand_id="ChEBI:CHEBI:24875"
FT                   /ligand_label="3"
FT                   /evidence="ECO:0000255|HAMAP-Rule:MF_01312"
SQ   SEQUENCE   496 AA;  55873 MW;  480ADB023A6F3831 CRC64;
     MTIHIKNNVN WVGQRDWEVS DFHGTEFKMT KGTSYNSYLI QEEKTVLIDT VDHRFSHQFI
     QNLEMEIDLA SIDYIVINHA EEDHSGALAA LMEKIPGTPI YCTENAIDSI VGHHHHPEWN
     FNPIKTGDAL DIGNGKQLIF VEAPMLHWPD SMMTYLTGDA ILFSNDAFGQ HYCDERLFND
     EVDQTELMDQ CLRYYANILT PFSALVTAKI KEVLSFNLPV DMIATSHGCV WRDNPTQIIH
     QYLEWADNYQ EDRITIFYDS MSNNTRMMAD AIAQGIHDVD PAVAVKVFNV SRQDKNDILT
     SVFRSKGILV GSSTMNNVMM PKIAGMLEEI AGLRFRAKKA GAFGSYGWNG GAVDRIHSRL
     TDAGFETAVG LKAKWRPDGQ AMKLCREHGQ FIAKQWALAP LTTTFNTINV DKKIQTIEEP
     VVLVEPSAEL EKPATEVTSS KDAKQCMLCS VCNWVYDPEI GEPNQGVEPN TPWSSVPNDF
     LCPECHLGKD VFVEIK
 
 
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