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NQRF_VIBPA
ID   NQRF_VIBPA              Reviewed;         407 AA.
AC   Q9LCJ0;
DT   14-AUG-2001, integrated into UniProtKB/Swiss-Prot.
DT   04-APR-2003, sequence version 2.
DT   03-AUG-2022, entry version 147.
DE   RecName: Full=Na(+)-translocating NADH-quinone reductase subunit F {ECO:0000255|HAMAP-Rule:MF_00430};
DE            Short=Na(+)-NQR subunit F {ECO:0000255|HAMAP-Rule:MF_00430};
DE            Short=Na(+)-translocating NQR subunit F {ECO:0000255|HAMAP-Rule:MF_00430};
DE            EC=7.2.1.1 {ECO:0000255|HAMAP-Rule:MF_00430};
DE   AltName: Full=NQR complex subunit F {ECO:0000255|HAMAP-Rule:MF_00430};
DE   AltName: Full=NQR-1 subunit F {ECO:0000255|HAMAP-Rule:MF_00430};
GN   Name=nqrF {ECO:0000255|HAMAP-Rule:MF_00430}; Synonyms=nqr6;
GN   OrderedLocusNames=VP2346;
OS   Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633).
OC   Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae;
OC   Vibrio.
OX   NCBI_TaxID=223926;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=RIMD 2210633;
RX   PubMed=12620739; DOI=10.1016/s0140-6736(03)12659-1;
RA   Makino K., Oshima K., Kurokawa K., Yokoyama K., Uda T., Tagomori K.,
RA   Iijima Y., Najima M., Nakano M., Yamashita A., Kubota Y., Kimura S.,
RA   Yasunaga T., Honda T., Shinagawa H., Hattori M., Iida T.;
RT   "Genome sequence of Vibrio parahaemolyticus: a pathogenic mechanism
RT   distinct from that of V. cholerae.";
RL   Lancet 361:743-749(2003).
RN   [2]
RP   NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 72-374.
RC   STRAIN=JCM 2147;
RX   PubMed=10779868; DOI=10.1139/w00-006;
RA   Kato S., Yumoto I.;
RT   "Detection of the Na(+)-translocating NADH-quinone reductase in marine
RT   bacteria using a PCR technique.";
RL   Can. J. Microbiol. 46:325-332(2000).
CC   -!- FUNCTION: NQR complex catalyzes the reduction of ubiquinone-1 to
CC       ubiquinol by two successive reactions, coupled with the transport of
CC       Na(+) ions from the cytoplasm to the periplasm. The first step is
CC       catalyzed by NqrF, which accepts electrons from NADH and reduces
CC       ubiquinone-1 to ubisemiquinone by a one-electron transfer pathway.
CC       {ECO:0000255|HAMAP-Rule:MF_00430}.
CC   -!- CATALYTIC ACTIVITY:
CC       Reaction=a ubiquinone + H(+) + n Na(+)(in) + NADH = a ubiquinol + n
CC         Na(+)(out) + NAD(+); Xref=Rhea:RHEA:47748, Rhea:RHEA-COMP:9565,
CC         Rhea:RHEA-COMP:9566, ChEBI:CHEBI:15378, ChEBI:CHEBI:16389,
CC         ChEBI:CHEBI:17976, ChEBI:CHEBI:29101, ChEBI:CHEBI:57540,
CC         ChEBI:CHEBI:57945; EC=7.2.1.1; Evidence={ECO:0000255|HAMAP-
CC         Rule:MF_00430};
CC   -!- COFACTOR:
CC       Name=[2Fe-2S] cluster; Xref=ChEBI:CHEBI:190135;
CC         Evidence={ECO:0000255|HAMAP-Rule:MF_00430};
CC       Note=Binds 1 [2Fe-2S] cluster. {ECO:0000255|HAMAP-Rule:MF_00430};
CC   -!- COFACTOR:
CC       Name=FAD; Xref=ChEBI:CHEBI:57692;
CC         Evidence={ECO:0000255|HAMAP-Rule:MF_00430};
CC   -!- SUBUNIT: Composed of six subunits; NqrA, NqrB, NqrC, NqrD, NqrE and
CC       NqrF. {ECO:0000255|HAMAP-Rule:MF_00430}.
CC   -!- SUBCELLULAR LOCATION: Cell inner membrane {ECO:0000255|HAMAP-
CC       Rule:MF_00430}; Single-pass membrane protein {ECO:0000255|HAMAP-
CC       Rule:MF_00430}.
CC   -!- SIMILARITY: Belongs to the NqrF family. {ECO:0000255|HAMAP-
CC       Rule:MF_00430}.
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DR   EMBL; BA000031; BAC60609.1; -; Genomic_DNA.
DR   EMBL; AB024725; BAA83762.1; -; Genomic_DNA.
DR   RefSeq; NP_798725.1; NC_004603.1.
DR   RefSeq; WP_005456545.1; NC_004603.1.
DR   AlphaFoldDB; Q9LCJ0; -.
DR   SMR; Q9LCJ0; -.
DR   STRING; 223926.28807344; -.
DR   EnsemblBacteria; BAC60609; BAC60609; BAC60609.
DR   GeneID; 1189859; -.
DR   KEGG; vpa:VP2346; -.
DR   PATRIC; fig|223926.6.peg.2249; -.
DR   eggNOG; COG2871; Bacteria.
DR   HOGENOM; CLU_003827_7_2_6; -.
DR   OMA; FIKEFVV; -.
DR   Proteomes; UP000002493; Chromosome 1.
DR   GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR   GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell.
DR   GO; GO:0051537; F:2 iron, 2 sulfur cluster binding; IEA:UniProtKB-KW.
DR   GO; GO:0009055; F:electron transfer activity; IEA:UniProtKB-UniRule.
DR   GO; GO:0050660; F:flavin adenine dinucleotide binding; IEA:UniProt.
DR   GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR   GO; GO:0016655; F:oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor; IEA:InterPro.
DR   GO; GO:0006814; P:sodium ion transport; IEA:UniProtKB-UniRule.
DR   CDD; cd00207; fer2; 1.
DR   Gene3D; 3.10.20.30; -; 1.
DR   Gene3D; 3.40.50.80; -; 1.
DR   HAMAP; MF_00430; NqrF; 1.
DR   InterPro; IPR036010; 2Fe-2S_ferredoxin-like_sf.
DR   InterPro; IPR001041; 2Fe-2S_ferredoxin-type.
DR   InterPro; IPR012675; Beta-grasp_dom_sf.
DR   InterPro; IPR008333; Cbr1-like_FAD-bd_dom.
DR   InterPro; IPR017927; FAD-bd_FR_type.
DR   InterPro; IPR001709; Flavoprot_Pyr_Nucl_cyt_Rdtase.
DR   InterPro; IPR039261; FNR_nucleotide-bd.
DR   InterPro; IPR010205; NqrF.
DR   InterPro; IPR001433; OxRdtase_FAD/NAD-bd.
DR   InterPro; IPR017938; Riboflavin_synthase-like_b-brl.
DR   Pfam; PF00970; FAD_binding_6; 1.
DR   Pfam; PF00111; Fer2; 1.
DR   Pfam; PF00175; NAD_binding_1; 1.
DR   PIRSF; PIRSF000044; Cis_Diol_DH_RD; 1.
DR   PRINTS; PR00371; FPNCR.
DR   SUPFAM; SSF52343; SSF52343; 1.
DR   SUPFAM; SSF54292; SSF54292; 1.
DR   SUPFAM; SSF63380; SSF63380; 1.
DR   TIGRFAMs; TIGR01941; nqrF; 1.
DR   PROSITE; PS51085; 2FE2S_FER_2; 1.
DR   PROSITE; PS51384; FAD_FR; 1.
PE   3: Inferred from homology;
KW   2Fe-2S; Cell inner membrane; Cell membrane; FAD; Flavoprotein;
KW   Ion transport; Iron; Iron-sulfur; Membrane; Metal-binding; NAD;
KW   Reference proteome; Sodium; Sodium transport; Translocase; Transmembrane;
KW   Transmembrane helix; Transport; Ubiquinone.
FT   CHAIN           1..407
FT                   /note="Na(+)-translocating NADH-quinone reductase subunit
FT                   F"
FT                   /id="PRO_0000074509"
FT   TRANSMEM        3..23
FT                   /note="Helical"
FT                   /evidence="ECO:0000255|HAMAP-Rule:MF_00430"
FT   DOMAIN          32..126
FT                   /note="2Fe-2S ferredoxin-type"
FT                   /evidence="ECO:0000255|HAMAP-Rule:MF_00430"
FT   DOMAIN          129..269
FT                   /note="FAD-binding FR-type"
FT                   /evidence="ECO:0000255|HAMAP-Rule:MF_00430"
FT   REGION          272..389
FT                   /note="Catalytic"
FT   BINDING         69
FT                   /ligand="[2Fe-2S] cluster"
FT                   /ligand_id="ChEBI:CHEBI:190135"
FT                   /evidence="ECO:0000255|HAMAP-Rule:MF_00430"
FT   BINDING         75
FT                   /ligand="[2Fe-2S] cluster"
FT                   /ligand_id="ChEBI:CHEBI:190135"
FT                   /evidence="ECO:0000255|HAMAP-Rule:MF_00430"
FT   BINDING         78
FT                   /ligand="[2Fe-2S] cluster"
FT                   /ligand_id="ChEBI:CHEBI:190135"
FT                   /evidence="ECO:0000255|HAMAP-Rule:MF_00430"
FT   BINDING         110
FT                   /ligand="[2Fe-2S] cluster"
FT                   /ligand_id="ChEBI:CHEBI:190135"
FT                   /evidence="ECO:0000255|HAMAP-Rule:MF_00430"
FT   CONFLICT        114
FT                   /note="V -> M (in Ref. 2; BAA83762)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        185
FT                   /note="Q -> E (in Ref. 2; BAA83762)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        278
FT                   /note="I -> V (in Ref. 2; BAA83762)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        324..326
FT                   /note="GLA -> MLQ (in Ref. 2; BAA83762)"
FT                   /evidence="ECO:0000305"
SQ   SEQUENCE   407 AA;  45083 MW;  747DCC8E99EDBE3A CRC64;
     MDIILGVVMF TLIVLALVLV ILFAKSKLVP TGDITISVNG DADKAIVTQP GGKLLSALAG
     AGVFVSSACG GGGSCGQCRV KVKSGGGDIL PTELDHITKG EAREGERLAC QVAVKTDMDI
     ELPEEIFGVK KWECTVISND NKATFIKELK LQIPDGESVP FRAGGYIQIE APAHHVKYAD
     YDIPQEYRED WEKFNLFRYE SKVNEETIRA YSMANYPEEH GIIMLNVRIA TPPPNNPDVP
     PGIMSSYIWS LKEGDKCTIS GPFGEFFAKD TDAEMVFIGG GAGMAPMRSH IFDQLKRLHS
     KRKMSFWYGA RSKREMFYVE DFDGLAAEND NFVWHCALSD PLPEDNWDGY TGFIHNVLYE
     NYLRDHEAPE DCEYYMCGPP MMNAAVIGML KDLGVEDENI LLDDFGG
 
 
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