ID   NRDR_ALTMD              Reviewed;         149 AA.
AC   B4RV94; F2G250;
DT   14-APR-2009, integrated into UniProtKB/Swiss-Prot.
DT   23-SEP-2008, sequence version 1.
DT   25-MAY-2022, entry version 87.
DE   RecName: Full=Transcriptional repressor NrdR {ECO:0000255|HAMAP-Rule:MF_00440};
GN   Name=nrdR1 {ECO:0000255|HAMAP-Rule:MF_00440};
GN   OrderedLocusNames=MADE_1005190;
GN   and
GN   Name=nrdR2 {ECO:0000255|HAMAP-Rule:MF_00440};
GN   OrderedLocusNames=MADE_1012455;
OS   Alteromonas mediterranea (strain DSM 17117 / CIP 110805 / LMG 28347 / Deep
OS   ecotype).
OC   Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales;
OC   Alteromonadaceae; Alteromonas/Salinimonas group; Alteromonas.
OX   NCBI_TaxID=1774373;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=DSM 17117 / CIP 110805 / LMG 28347 / Deep ecotype;
RX   PubMed=18670397; DOI=10.1038/ismej.2008.74;
RA   Ivars-Martinez E., Martin-Cuadrado A.-B., D'Auria G., Mira A., Ferriera S.,
RA   Johnson J., Friedman R., Rodriguez-Valera F.;
RT   "Comparative genomics of two ecotypes of the marine planktonic copiotroph
RT   Alteromonas macleodii suggests alternative lifestyles associated with
RT   different kinds of particulate organic matter.";
RL   ISME J. 2:1194-1212(2008).
CC   -!- FUNCTION: Negatively regulates transcription of bacterial
CC       ribonucleotide reductase nrd genes and operons by binding to NrdR-
CC       boxes. {ECO:0000255|HAMAP-Rule:MF_00440}.
CC   -!- COFACTOR:
CC       Name=Zn(2+); Xref=ChEBI:CHEBI:29105;
CC         Evidence={ECO:0000255|HAMAP-Rule:MF_00440};
CC       Note=Binds 1 zinc ion. {ECO:0000255|HAMAP-Rule:MF_00440};
CC   -!- SIMILARITY: Belongs to the NrdR family. {ECO:0000255|HAMAP-
CC       Rule:MF_00440}.
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DR   EMBL; CP001103; AEA97184.1; -; Genomic_DNA.
DR   EMBL; CP001103; AEA98627.1; -; Genomic_DNA.
DR   RefSeq; WP_012517538.1; NC_011138.3.
DR   AlphaFoldDB; B4RV94; -.
DR   SMR; B4RV94; -.
DR   EnsemblBacteria; AEA98627; AEA98627; MADE_1012455.
DR   GeneID; 61589443; -.
DR   KEGG; amc:MADE_1012455; -.
DR   HOGENOM; CLU_108412_0_0_6; -.
DR   OMA; YRFTTYE; -.
DR   Proteomes; UP000001870; Chromosome.
DR   GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0008270; F:zinc ion binding; IEA:UniProtKB-UniRule.
DR   GO; GO:0045892; P:negative regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule.
DR   HAMAP; MF_00440; NrdR; 1.
DR   InterPro; IPR005144; ATP-cone_dom.
DR   InterPro; IPR003796; RNR_NrdR-like.
DR   PANTHER; PTHR30455; PTHR30455; 1.
DR   Pfam; PF03477; ATP-cone; 1.
DR   TIGRFAMs; TIGR00244; TIGR00244; 1.
DR   PROSITE; PS51161; ATP_CONE; 1.
PE   3: Inferred from homology;
KW   ATP-binding; DNA-binding; Metal-binding; Nucleotide-binding; Repressor;
KW   Transcription; Transcription regulation; Zinc; Zinc-finger.
FT   CHAIN           1..149
FT                   /note="Transcriptional repressor NrdR"
FT                   /id="PRO_1000124463"
FT   DOMAIN          49..139
FT                   /note="ATP-cone"
FT                   /evidence="ECO:0000255|HAMAP-Rule:MF_00440"
FT   ZN_FING         3..34
FT                   /evidence="ECO:0000255|HAMAP-Rule:MF_00440"
SQ   SEQUENCE   149 AA;  17278 MW;  A64DD6E85DCFD737 CRC64;
     MFCPFCSEQE TKVIDSRLVA EGQQVRRRRE CMVCHERFTT FESAELVMPR VIKRDGSREP
     FNEDKLRAGL QRALEKRPVS TEKVEQCILS LKSQLRATGE REVSSELLGN LIMKALKELD
     KVAYVRFASV YRSFEDIREF GEEIARLGD