NSP1_ORYSJ
ID NSP1_ORYSJ Reviewed; 523 AA.
AC Q84MQ9;
DT 16-OCT-2019, integrated into UniProtKB/Swiss-Prot.
DT 01-JUN-2003, sequence version 1.
DT 03-AUG-2022, entry version 96.
DE RecName: Full=Protein NODULATION SIGNALING PATHWAY 1 {ECO:0000303|PubMed:20719766};
DE Short=OsNSP1 {ECO:0000303|PubMed:20719766};
DE AltName: Full=GRAS family protein 14 {ECO:0000303|PubMed:15316287};
DE Short=OsGRAS-14 {ECO:0000303|PubMed:15316287};
GN Name=NSP1 {ECO:0000303|PubMed:15316287};
GN OrderedLocusNames=Os03g0408600 {ECO:0000312|EMBL:BAS84648.1},
GN LOC_Os03g29480 {ECO:0000312|EMBL:ABF96542.1};
GN ORFNames=OSJNBa0030J19.7 {ECO:0000312|EMBL:AAP12983.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16109971; DOI=10.1101/gr.3869505;
RG The rice chromosome 3 sequencing consortium;
RA Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B.,
RA Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T.,
RA Fadrosh D., Bera J., Weaver B., Jin S., Johri S., Reardon M., Webb K.,
RA Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T.,
RA Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R.,
RA Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., Rambo T., Currie J.,
RA Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S.S.,
RA Luo M., Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M.,
RA Pries G., Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M.,
RA Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L.,
RA O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R.,
RA Jin W., Lee H.R., Jiang J., Jackson S.;
RT "Sequence, annotation, and analysis of synteny between rice chromosome 3
RT and diverged grass species.";
RL Genome Res. 15:1284-1291(2005).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP GENE FAMILY.
RX PubMed=15316287; DOI=10.1023/b:plan.0000038256.89809.57;
RA Tian C., Wan P., Sun S., Li J., Chen M.;
RT "Genome-wide analysis of the GRAS gene family in rice and Arabidopsis.";
RL Plant Mol. Biol. 54:519-532(2004).
RN [6]
RP FUNCTION.
RX PubMed=20719766; DOI=10.1093/pcp/pcq124;
RA Yokota K., Soyano T., Kouchi H., Hayashi M.;
RT "Function of GRAS proteins in root nodule symbiosis is retained in homologs
RT of a non-legume, rice.";
RL Plant Cell Physiol. 51:1436-1442(2010).
RN [7]
RP FUNCTION, AND TISSUE SPECIFICITY.
RX PubMed=22039214; DOI=10.1105/tpc.111.089771;
RA Liu W., Kohlen W., Lillo A., Op den Camp R., Ivanov S., Hartog M.,
RA Limpens E., Jamil M., Smaczniak C., Kaufmann K., Yang W.C., Hooiveld G.J.,
RA Charnikhova T., Bouwmeester H.J., Bisseling T., Geurts R.;
RT "Strigolactone biosynthesis in Medicago truncatula and rice requires the
RT symbiotic GRAS-type transcription factors NSP1 and NSP2.";
RL Plant Cell 23:3853-3865(2011).
CC -!- FUNCTION: Transcription factor involved in the control of strigolactone
CC biosynthesis in roots through the activation of the beta-carotene
CC isomerase D27, which participates in a pathway leading to biosynthesis
CC of strigolactones. {ECO:0000269|PubMed:22039214}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
CC -!- TISSUE SPECIFICITY: Expressed at low levels in roots.
CC {ECO:0000269|PubMed:22039214}.
CC -!- MISCELLANEOUS: Plants silencing NSP1 and NSP2 exhibit reduced
CC expression of the strigolactone biosynthetic gene D27, reduced levels
CC of strigolactones and increased shoot tillering (PubMed:22039214). Rice
CC NSP1 is a homolog of Lotus japonicus and Medicago truncatula NSP1
CC genes, which are transcriptional regulators essential for Nod-factor-
CC induced gene expression (Probable). Although rice roots cannot form
CC root nodule symbiosis, rice NSP1 is able to complement a NSP1-deficient
CC mutant in Lotus japonicus (PubMed:20719766). Rice NSP1 is able to
CC complement a NSP1-deficient mutant in Medicago truncatula
CC (PubMed:22039214). {ECO:0000269|PubMed:20719766,
CC ECO:0000269|PubMed:22039214, ECO:0000305|PubMed:20719766,
CC ECO:0000305|PubMed:22039214}.
CC -!- SIMILARITY: Belongs to the GRAS family. {ECO:0000305}.
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DR EMBL; AC135559; AAP12983.1; -; Genomic_DNA.
DR EMBL; DP000009; ABF96542.1; -; Genomic_DNA.
DR EMBL; AP014959; BAS84648.1; -; Genomic_DNA.
DR AlphaFoldDB; Q84MQ9; -.
DR SMR; Q84MQ9; -.
DR STRING; 39947.Q84MQ9; -.
DR PaxDb; Q84MQ9; -.
DR PRIDE; Q84MQ9; -.
DR EnsemblPlants; Os03t0408600-01; Os03t0408600-01; Os03g0408600.
DR Gramene; Os03t0408600-01; Os03t0408600-01; Os03g0408600.
DR InParanoid; Q84MQ9; -.
DR Proteomes; UP000000763; Chromosome 3.
DR Proteomes; UP000059680; Chromosome 3.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IBA:GO_Central.
DR GO; GO:0043565; F:sequence-specific DNA binding; IBA:GO_Central.
DR GO; GO:0042446; P:hormone biosynthetic process; IMP:CACAO.
DR GO; GO:2000032; P:regulation of secondary shoot formation; IMP:CACAO.
DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IBA:GO_Central.
DR InterPro; IPR005202; TF_GRAS.
DR PANTHER; PTHR31636; PTHR31636; 1.
DR Pfam; PF03514; GRAS; 1.
DR PROSITE; PS50985; GRAS; 1.
PE 2: Evidence at transcript level;
KW Nucleus; Reference proteome; Transcription; Transcription regulation.
FT CHAIN 1..523
FT /note="Protein NODULATION SIGNALING PATHWAY 1"
FT /id="PRO_0000448270"
FT DOMAIN 124..520
FT /note="GRAS"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
FT REGION 64..130
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 131..203
FT /note="Leucine repeat I (LRI)"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
FT REGION 222..295
FT /note="VHIID"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
FT REGION 317..343
FT /note="Leucine repeat II (LRII)"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
FT REGION 353..442
FT /note="PFYRE"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
FT REGION 445..520
FT /note="SAW"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
FT MOTIF 259..263
FT /note="VHIID"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
FT COMPBIAS 64..97
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 523 AA; 54078 MW; 3037CE7DCDA8C25E CRC64;
MSYHEEERHG GNGLDWFEES MSSLLAADVD LAGGGGDAGG GGYAWWWAAS PAAQQDDIGS
VVAQTLSPPS TAAPAAASPS IASPAASSPS DVPSSSSKKR KSPAHRAPGH TGGKKGGGGK
GGGGGSDRDM RWAEQLLNPC AVAVEAGNLS RVQHLFYVLG ELESFSGDAN HRLAAHGLRA
LARWLPAAVG PAAAAAVRVP PCSERPTTAF AAAEPRLFRA SLIRFHEVSP WFALPNALAN
AAIAQASTCG AAGATPRPLH VVDLGVSHGV QWPTLLESLT RQPGGRAPPS VRLTVVGPGA
TATSPVAPFS ASPPGYDFSP HLLRYAKSIN LDLRISRAAT LDDAVPGDDG EALVVCLQFR
LGHAAAEERR EVLRKARGLN PELVVLSELD SGVGVVGGDG GSAAGEFAAR LELLWRFLES
TSAAFKGKDV EERRLLEAEA GAILAAADVA AAGEGREGWR ERMAAAGFEE APFGAEAVES
ARSLLRKYDS GWEMSAPSPA AAAVALRWKG QPVSFCSLWR PAA
