NTPD_ENTHA
ID NTPD_ENTHA Reviewed; 210 AA.
AC P43435; I6T729;
DT 01-NOV-1995, integrated into UniProtKB/Swiss-Prot.
DT 09-JAN-2013, sequence version 2.
DT 03-AUG-2022, entry version 109.
DE RecName: Full=V-type sodium ATPase subunit D;
DE AltName: Full=Na(+)-translocating ATPase subunit D;
DE AltName: Full=V-type sodium pump subunit D;
GN Name=ntpD; OrderedLocusNames=EHR_08270;
OS Enterococcus hirae (strain ATCC 9790 / DSM 20160 / JCM 8729 / LMG 6399 /
OS NBRC 3181 / NCIMB 6459 / NCDO 1258 / NCTC 12367 / WDCM 00089 / R).
OC Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae;
OC Enterococcus.
OX NCBI_TaxID=768486;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA], PROTEIN SEQUENCE OF 1-14, AND FUNCTION.
RC STRAIN=ATCC 9790 / DSM 20160 / JCM 8729 / LMG 6399 / NBRC 3181 / NCIMB 6459
RC / NCDO 1258 / NCTC 12367 / WDCM 00089 / R;
RX PubMed=8157629; DOI=10.1016/s0021-9258(19)78088-0;
RA Takase K., Kakinuma S., Yamato I., Konishi K., Igarashi K., Kakinuma Y.;
RT "Sequencing and characterization of the ntp gene cluster for vacuolar-type
RT Na(+)-translocating ATPase of Enterococcus hirae.";
RL J. Biol. Chem. 269:11037-11044(1994).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC 9790 / DSM 20160 / JCM 8729 / LMG 6399 / NBRC 3181 / NCIMB 6459
RC / NCDO 1258 / NCTC 12367 / WDCM 00089 / R;
RX PubMed=22933757; DOI=10.1128/jb.01075-12;
RA Gaechter T., Wunderlin C., Schmidheini T., Solioz M.;
RT "Genome sequence of Enterococcus hirae (Streptococcus faecalis) ATCC 9790,
RT a model organism for the study of ion transport, bioenergetics, and copper
RT homeostasis.";
RL J. Bacteriol. 194:5126-5127(2012).
CC -!- FUNCTION: Involved in ATP-driven sodium extrusion.
CC {ECO:0000269|PubMed:8157629}.
CC -!- SIMILARITY: Belongs to the V-ATPase D subunit family. {ECO:0000305}.
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DR EMBL; D17462; BAA04277.1; -; Genomic_DNA.
DR EMBL; CP003504; AFM70581.1; -; Genomic_DNA.
DR PIR; F53610; F53610.
DR RefSeq; WP_010738012.1; NZ_KB946231.1.
DR PDB; 3AON; X-ray; 2.00 A; A=1-210.
DR PDB; 3VR4; X-ray; 2.17 A; G=1-210.
DR PDB; 3VR5; X-ray; 3.90 A; G=1-210.
DR PDB; 3VR6; X-ray; 2.68 A; G=1-210.
DR PDB; 5KNB; X-ray; 3.25 A; G=1-210.
DR PDB; 5KNC; X-ray; 3.02 A; G=1-210.
DR PDB; 5KND; X-ray; 2.89 A; G=1-210.
DR PDBsum; 3AON; -.
DR PDBsum; 3VR4; -.
DR PDBsum; 3VR5; -.
DR PDBsum; 3VR6; -.
DR PDBsum; 5KNB; -.
DR PDBsum; 5KNC; -.
DR PDBsum; 5KND; -.
DR AlphaFoldDB; P43435; -.
DR SMR; P43435; -.
DR DIP; DIP-59796N; -.
DR IntAct; P43435; 2.
DR STRING; 768486.EHR_08270; -.
DR TCDB; 3.A.2.2.2; the h(+)- or na(+)-translocating f-type, v-type and a-type atpase (f-atpase) superfamily.
DR EnsemblBacteria; AFM70581; AFM70581; EHR_08270.
DR KEGG; ehr:EHR_08270; -.
DR eggNOG; COG1394; Bacteria.
DR HOGENOM; CLU_069688_2_1_9; -.
DR BioCyc; MetaCyc:MON-14149; -.
DR Proteomes; UP000002895; Chromosome.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-UniRule.
DR GO; GO:0046933; F:proton-transporting ATP synthase activity, rotational mechanism; IEA:UniProtKB-UniRule.
DR GO; GO:0046961; F:proton-transporting ATPase activity, rotational mechanism; IEA:InterPro.
DR GO; GO:0042777; P:proton motive force-driven plasma membrane ATP synthesis; IEA:UniProtKB-UniRule.
DR GO; GO:0006814; P:sodium ion transport; IEA:UniProtKB-KW.
DR HAMAP; MF_00271; ATP_synth_D_arch; 1.
DR InterPro; IPR002699; V_ATPase_D.
DR PANTHER; PTHR11671; PTHR11671; 1.
DR Pfam; PF01813; ATP-synt_D; 1.
DR TIGRFAMs; TIGR00309; V_ATPase_subD; 1.
PE 1: Evidence at protein level;
KW 3D-structure; Direct protein sequencing; Ion transport; Sodium;
KW Sodium transport; Transport.
FT CHAIN 1..210
FT /note="V-type sodium ATPase subunit D"
FT /id="PRO_0000144275"
FT CONFLICT 201..210
FT /note="IKVKNMGTEE -> SQSEKYGNRRVRLIQFSILMAFFMIRTNRI (in
FT Ref. 1; BAA04277)"
FT /evidence="ECO:0000305"
FT HELIX 9..69
FT /evidence="ECO:0007829|PDB:3AON"
FT HELIX 74..81
FT /evidence="ECO:0007829|PDB:3AON"
FT STRAND 89..97
FT /evidence="ECO:0007829|PDB:3AON"
FT STRAND 100..108
FT /evidence="ECO:0007829|PDB:3AON"
FT HELIX 111..113
FT /evidence="ECO:0007829|PDB:3AON"
FT HELIX 127..172
FT /evidence="ECO:0007829|PDB:3AON"
FT HELIX 174..193
FT /evidence="ECO:0007829|PDB:3AON"
SQ SEQUENCE 210 AA; 24566 MW; 6779016F1921BC85 CRC64;
MRLNVNPTRM ELTRLKKQLT TATRGHKLLK DKQDELMRQF ILLIRKNNEL RQAIEKETQT
AMKDFVLAKS TVEEAFIDEL LALPAENVSI SVVEKNIMSV KVPLMNFQYD ETLNETPLEY
GYLHSNAELD RSIDGFTQLL PKLLKLAEVE KTCQLMAEEI EKTRRRVNAL EYMTIPQLEE
TIYYIKMKLE ENERAEVTRL IKVKNMGTEE