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NU5C_SOYBN
ID   NU5C_SOYBN              Reviewed;         750 AA.
AC   Q2PMM9; Q29S44;
DT   06-FEB-2007, integrated into UniProtKB/Swiss-Prot.
DT   24-JAN-2006, sequence version 1.
DT   03-AUG-2022, entry version 58.
DE   RecName: Full=NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic;
DE            EC=7.1.1.-;
DE   AltName: Full=NAD(P)H dehydrogenase subunit 5;
DE   AltName: Full=NADH-plastoquinone oxidoreductase subunit 5;
GN   Name=ndhF;
OS   Glycine max (Soybean) (Glycine hispida).
OG   Plastid; Chloroplast.
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC   NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine;
OC   Glycine subgen. Soja.
OX   NCBI_TaxID=3847;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. PI 437654;
RX   PubMed=16247559; DOI=10.1007/s11103-005-8882-0;
RA   Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G.,
RA   Jansen R.K.;
RT   "Complete chloroplast genome sequence of Glycine max and comparative
RT   analyses with other legume genomes.";
RL   Plant Mol. Biol. 59:309-322(2005).
RN   [2]
RP   NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 336-537.
RX   PubMed=16293423; DOI=10.1016/j.ympev.2005.10.002;
RA   Zhang L.-B., Simmons M.P., Kocyan A., Renner S.S.;
RT   "Phylogeny of the Cucurbitales based on DNA sequences of nine loci from
RT   three genomes: implications for morphological and sexual system
RT   evolution.";
RL   Mol. Phylogenet. Evol. 39:305-322(2006).
CC   -!- FUNCTION: NDH shuttles electrons from NAD(P)H:plastoquinone, via FMN
CC       and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain
CC       and possibly in a chloroplast respiratory chain. The immediate electron
CC       acceptor for the enzyme in this species is believed to be
CC       plastoquinone. Couples the redox reaction to proton translocation, and
CC       thus conserves the redox energy in a proton gradient (By similarity).
CC       {ECO:0000250}.
CC   -!- CATALYTIC ACTIVITY:
CC       Reaction=a plastoquinone + (n+1) H(+)(in) + NADH = a plastoquinol + n
CC         H(+)(out) + NAD(+); Xref=Rhea:RHEA:42608, Rhea:RHEA-COMP:9561,
CC         Rhea:RHEA-COMP:9562, ChEBI:CHEBI:15378, ChEBI:CHEBI:17757,
CC         ChEBI:CHEBI:57540, ChEBI:CHEBI:57945, ChEBI:CHEBI:62192;
CC   -!- CATALYTIC ACTIVITY:
CC       Reaction=a plastoquinone + (n+1) H(+)(in) + NADPH = a plastoquinol + n
CC         H(+)(out) + NADP(+); Xref=Rhea:RHEA:42612, Rhea:RHEA-COMP:9561,
CC         Rhea:RHEA-COMP:9562, ChEBI:CHEBI:15378, ChEBI:CHEBI:17757,
CC         ChEBI:CHEBI:57783, ChEBI:CHEBI:58349, ChEBI:CHEBI:62192;
CC   -!- SUBUNIT: NDH is composed of at least 16 different subunits, 5 of which
CC       are encoded in the nucleus. {ECO:0000250}.
CC   -!- SUBCELLULAR LOCATION: Plastid, chloroplast thylakoid membrane
CC       {ECO:0000250}; Multi-pass membrane protein {ECO:0000250}.
CC   -!- SIMILARITY: Belongs to the complex I subunit 5 family. {ECO:0000305}.
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DR   EMBL; DQ317523; ABC25180.1; -; Genomic_DNA.
DR   EMBL; AY968515; AAZ08375.1; -; Genomic_DNA.
DR   RefSeq; YP_538821.1; NC_007942.1.
DR   AlphaFoldDB; Q2PMM9; -.
DR   SMR; Q2PMM9; -.
DR   STRING; 3847.GLYMA06G32802.1; -.
DR   PRIDE; Q2PMM9; -.
DR   GeneID; 3989365; -.
DR   KEGG; gmx:3989365; -.
DR   eggNOG; KOG4668; Eukaryota.
DR   InParanoid; Q2PMM9; -.
DR   OrthoDB; 526738at2759; -.
DR   Proteomes; UP000008827; Chloroplast.
DR   GO; GO:0009535; C:chloroplast thylakoid membrane; IEA:UniProtKB-SubCell.
DR   GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR   GO; GO:0008137; F:NADH dehydrogenase (ubiquinone) activity; IEA:InterPro.
DR   GO; GO:0003954; F:NADH dehydrogenase activity; IBA:GO_Central.
DR   GO; GO:0048038; F:quinone binding; IEA:UniProtKB-KW.
DR   GO; GO:0042773; P:ATP synthesis coupled electron transport; IEA:InterPro.
DR   GO; GO:0015990; P:electron transport coupled proton transport; IBA:GO_Central.
DR   InterPro; IPR002128; NADH_UbQ_OxRdtase_chlpt_su5_C.
DR   InterPro; IPR018393; NADHpl_OxRdtase_5_subgr.
DR   InterPro; IPR001750; ND/Mrp_mem.
DR   InterPro; IPR003945; NU5C-like.
DR   InterPro; IPR001516; Proton_antipo_N.
DR   PANTHER; PTHR42829; PTHR42829; 1.
DR   Pfam; PF01010; Proton_antipo_C; 1.
DR   Pfam; PF00361; Proton_antipo_M; 1.
DR   Pfam; PF00662; Proton_antipo_N; 1.
DR   TIGRFAMs; TIGR01974; NDH_I_L; 1.
PE   3: Inferred from homology;
KW   Chloroplast; Membrane; NAD; NADP; Plastid; Plastoquinone; Quinone;
KW   Reference proteome; Thylakoid; Translocase; Transmembrane;
KW   Transmembrane helix; Transport.
FT   CHAIN           1..750
FT                   /note="NAD(P)H-quinone oxidoreductase subunit 5,
FT                   chloroplastic"
FT                   /id="PRO_0000277448"
FT   TRANSMEM        9..29
FT                   /note="Helical"
FT                   /evidence="ECO:0000255"
FT   TRANSMEM        40..60
FT                   /note="Helical"
FT                   /evidence="ECO:0000255"
FT   TRANSMEM        89..109
FT                   /note="Helical"
FT                   /evidence="ECO:0000255"
FT   TRANSMEM        125..145
FT                   /note="Helical"
FT                   /evidence="ECO:0000255"
FT   TRANSMEM        147..167
FT                   /note="Helical"
FT                   /evidence="ECO:0000255"
FT   TRANSMEM        185..205
FT                   /note="Helical"
FT                   /evidence="ECO:0000255"
FT   TRANSMEM        219..239
FT                   /note="Helical"
FT                   /evidence="ECO:0000255"
FT   TRANSMEM        258..278
FT                   /note="Helical"
FT                   /evidence="ECO:0000255"
FT   TRANSMEM        280..300
FT                   /note="Helical"
FT                   /evidence="ECO:0000255"
FT   TRANSMEM        327..347
FT                   /note="Helical"
FT                   /evidence="ECO:0000255"
FT   TRANSMEM        354..374
FT                   /note="Helical"
FT                   /evidence="ECO:0000255"
FT   TRANSMEM        396..416
FT                   /note="Helical"
FT                   /evidence="ECO:0000255"
FT   TRANSMEM        425..445
FT                   /note="Helical"
FT                   /evidence="ECO:0000255"
FT   TRANSMEM        554..574
FT                   /note="Helical"
FT                   /evidence="ECO:0000255"
FT   TRANSMEM        607..627
FT                   /note="Helical"
FT                   /evidence="ECO:0000255"
FT   TRANSMEM        728..748
FT                   /note="Helical"
FT                   /evidence="ECO:0000255"
SQ   SEQUENCE   750 AA;  85653 MW;  586E8E05F9878E1D CRC64;
     MEYTHQYSWI IPFIPFPVPM LIGVGLLLFP TATKYLRRMW AFPSILLLTI VMMFSLDLSI
     HQINNSSFYQ YVWSWTINND LSLEFGYLID SLTSIMSILI TTVGILVLIY SDNYMSHDQG
     YLRFFAYLTL FNISMLGLVT SSNLIQIYVF WELVGMCSYL LIGFWFTRPI AANACQKAFV
     TNRVGDFGLL LGILGLYWIT GSLEFRDLFQ IINNLIYKNE VNIFFLTLVA LLLFCGSVAK
     SAQFPLHVWL PDAMEGPTPI SALIHAATMV AAGIFLVARL LPLFIVLPAI MNGIAFIGII
     TVVLGATLAI AQQDIKKNLA YSTMSQLGYM MLALGMGSYR AALFHLITHA YSKALLFLGS
     GSIIHSMEAL VGYSPAKSQN MVLMGGLTKH VPITKTSFLV GTLSLCGIPP FACFWSKDEI
     LNDSWLYSPI FAIIACCTAG LTAFYMFRIY LLVFEGYLNV HFLNFNGKKN SSFYSISLWG
     KKEVKQKLKN KNFFLALLRM KNNEMTSFFI RKIYPHRINQ NVKNITCLFF DINYFGTKKT
     ACLYPNESDN TMRFSILVLV LFTLFVGTIG ISFSYKGIDF DILSKWLIPF IDLLHKNSKN
     FVDWYEFLTN AAFSVILTFL GIFIASFFYK PVYSDLQNLN LLNLFEKNVL NKKVADYFQN
     VIYDWSYNRG YIDVFYDISL ITSVRKLVQF NYFFDKKIID AIPNGIGITS FFMGEAIKYV
     GGGRISSYIL LYIFYIVIFI LIWYFLFTNI
 
 
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