NUCL1_ORYSJ
ID NUCL1_ORYSJ Reviewed; 572 AA.
AC Q6Z1C0; A0A0P0XCT5;
DT 16-MAY-2012, integrated into UniProtKB/Swiss-Prot.
DT 05-JUL-2004, sequence version 1.
DT 03-AUG-2022, entry version 105.
DE RecName: Full=Nucleolin 1;
DE AltName: Full=Protein NUCLEOLIN LIKE 1;
GN OrderedLocusNames=Os08g0192900, LOC_Os08g09350;
GN ORFNames=OsJ_26324, OSJNBa0056O06.24;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
CC -!- FUNCTION: Involved in pre-rRNA processing and ribosome assembly.
CC {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Nucleus, nucleolus {ECO:0000250}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AK103422; Type=Frameshift; Evidence={ECO:0000305};
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; AP005441; BAD05605.1; -; Genomic_DNA.
DR EMBL; AP008214; BAF23092.1; -; Genomic_DNA.
DR EMBL; AP014964; BAT04188.1; -; Genomic_DNA.
DR EMBL; CM000145; EAZ41784.1; -; Genomic_DNA.
DR EMBL; AK103422; -; NOT_ANNOTATED_CDS; mRNA.
DR RefSeq; XP_015650883.1; XM_015795397.1.
DR AlphaFoldDB; Q6Z1C0; -.
DR SMR; Q6Z1C0; -.
DR STRING; 4530.OS08T0192900-01; -.
DR PaxDb; Q6Z1C0; -.
DR PRIDE; Q6Z1C0; -.
DR EnsemblPlants; Os08t0192900-01; Os08t0192900-01; Os08g0192900.
DR GeneID; 4344865; -.
DR Gramene; Os08t0192900-01; Os08t0192900-01; Os08g0192900.
DR KEGG; osa:4344865; -.
DR eggNOG; KOG4210; Eukaryota.
DR HOGENOM; CLU_030920_1_0_1; -.
DR InParanoid; Q6Z1C0; -.
DR OMA; EGHFAEC; -.
DR OrthoDB; 1202220at2759; -.
DR Proteomes; UP000000763; Chromosome 8.
DR Proteomes; UP000007752; Chromosome 8.
DR Proteomes; UP000059680; Chromosome 8.
DR ExpressionAtlas; Q6Z1C0; baseline and differential.
DR Genevisible; Q6Z1C0; OS.
DR GO; GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
DR GO; GO:1990904; C:ribonucleoprotein complex; IBA:GO_Central.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
DR CDD; cd12450; RRM1_NUCLs; 1.
DR CDD; cd12451; RRM2_NUCLs; 1.
DR Gene3D; 3.30.70.330; -; 2.
DR InterPro; IPR034349; NUCL_RRM1.
DR InterPro; IPR034350; NUCL_RRM2.
DR InterPro; IPR012677; Nucleotide-bd_a/b_plait_sf.
DR InterPro; IPR035979; RBD_domain_sf.
DR InterPro; IPR000504; RRM_dom.
DR Pfam; PF00076; RRM_1; 2.
DR SMART; SM00360; RRM; 2.
DR SUPFAM; SSF54928; SSF54928; 2.
DR PROSITE; PS50102; RRM; 2.
PE 2: Evidence at transcript level;
KW Nucleus; Reference proteome; Repeat; RNA-binding; rRNA processing.
FT CHAIN 1..572
FT /note="Nucleolin 1"
FT /id="PRO_0000417402"
FT DOMAIN 311..387
FT /note="RRM 1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00176"
FT DOMAIN 411..492
FT /note="RRM 2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00176"
FT REGION 1..312
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 488..572
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 22..40
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 91..112
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 156..179
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 221..236
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 247..263
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 286..312
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 490..516
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 528..545
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 553..572
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 572 AA; 60394 MW; 98E1E2E2F2EE6362 CRC64;
MGKASKKSVA VAVAPAAVPA KGKGGKKREA EDEIEKAVSA KKQKAAAAPP AKAVPAPKAD
AKKAKKQPPP KKAASSSSGS SSEEDSSESE EEVKVQVKKT TKPVKQESSS DESSDESSDD
EDAKPADPVA NNGLKKGKPA SSDSESDSDD EMDEDEKPAA PVKKTSVTAQ KKKDDSDSSE
SESDESDSDE DVPTKSKAPA VAAKNDDSTD GSESESDSED EDAAPKGAAK KESSSDEEDD
SSEESSDDEP KQPQQKKAQE ESSEESSEED SDEEDEKLAK TPKKKTPAAT KSQNDEPKTP
ASNQSQGTES ATLFMGNLSF NLNQDQVKEF FQEVGEVISV RLATHEDGSS RGFGHVQFAS
SEEAKKALEL HGCDLDGRPV RLDLAHERGA YTPHSRNDTG SFQKQNRGSS QSIFVKGFDS
SLEESKIRES LEGHFADCGE ITRVSVPMDR ETGASKGIAY IDFKDQASFS KALELSGSDL
GGYNLYVDEA KPKGDSRDGG GRRGGRSGDR FGGRSGDRFG GRSGGRFGGR DGGRRGGRGG
RDGGRRGGRG GFQSRQSAGT ASTGKKTTFG DE
