ARP7_ORYSJ
ID ARP7_ORYSJ Reviewed; 360 AA.
AC A3ANB5; B9F6B5; Q0DN07; Q10CH7; Q9AY60;
DT 26-FEB-2008, integrated into UniProtKB/Swiss-Prot.
DT 26-FEB-2008, sequence version 2.
DT 03-AUG-2022, entry version 83.
DE RecName: Full=Actin-related protein 7;
GN Name=ARP7; OrderedLocusNames=Os03g0783000, LOC_Os03g56970;
GN ORFNames=OsJ_012287, OsJ_12834 {ECO:0000312|EMBL:EEE60046.1},
GN OSJNBa0091J19.6;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16109971; DOI=10.1101/gr.3869505;
RG The rice chromosome 3 sequencing consortium;
RA Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B.,
RA Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T.,
RA Fadrosh D., Bera J., Weaver B., Jin S., Johri S., Reardon M., Webb K.,
RA Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T.,
RA Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R.,
RA Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., Rambo T., Currie J.,
RA Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S.S.,
RA Luo M., Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M.,
RA Pries G., Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M.,
RA Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L.,
RA O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R.,
RA Jin W., Lee H.R., Jiang J., Jackson S.;
RT "Sequence, annotation, and analysis of synteny between rice chromosome 3
RT and diverged grass species.";
RL Genome Res. 15:1284-1291(2005).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [7]
RP REVIEW, GENE FAMILY, AND NOMENCLATURE.
RX PubMed=15063870; DOI=10.1016/j.tplants.2004.02.004;
RA Kandasamy M.K., Deal R.B., McKinney E.C., Meagher R.B.;
RT "Plant actin-related proteins.";
RL Trends Plant Sci. 9:196-202(2004).
CC -!- FUNCTION: Essential protein required during embryogenesis and all plant
CC development stages, probably through a chromatin-mediated regulation of
CC gene expression. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000250|UniProtKB:Q8L4Y5}. Cytoplasm
CC {ECO:0000250|UniProtKB:Q8L4Y5}.
CC -!- SIMILARITY: Belongs to the actin family. Plant ARP7 subfamily.
CC {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAK09223.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=AAK09223.1; Type=Frameshift; Evidence={ECO:0000305};
CC Sequence=ABF99200.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=ABF99200.1; Type=Frameshift; Evidence={ECO:0000305};
CC Sequence=BAF13381.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=BAF13381.1; Type=Frameshift; Evidence={ECO:0000305};
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DR EMBL; AC084320; AAK09223.1; ALT_SEQ; Genomic_DNA.
DR EMBL; DP000009; ABF99200.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AP008209; BAF13381.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AP014959; BAS86698.1; -; Genomic_DNA.
DR EMBL; CM000140; EEE60046.1; -; Genomic_DNA.
DR EMBL; AK069426; -; NOT_ANNOTATED_CDS; mRNA.
DR RefSeq; XP_015632359.1; XM_015776873.1.
DR RefSeq; XP_015632360.1; XM_015776874.1.
DR AlphaFoldDB; A3ANB5; -.
DR SMR; A3ANB5; -.
DR STRING; 4530.OS03T0783000-01; -.
DR PRIDE; A3ANB5; -.
DR EnsemblPlants; Os03t0783000-01; Os03t0783000-01; Os03g0783000.
DR GeneID; 9266759; -.
DR Gramene; Os03t0783000-01; Os03t0783000-01; Os03g0783000.
DR KEGG; osa:9266759; -.
DR eggNOG; KOG0676; Eukaryota.
DR HOGENOM; CLU_027965_0_3_1; -.
DR InParanoid; A3ANB5; -.
DR OMA; NVAPEYH; -.
DR OrthoDB; 649708at2759; -.
DR Proteomes; UP000000763; Chromosome 3.
DR Proteomes; UP000007752; Chromosome 3.
DR Proteomes; UP000059680; Chromosome 3.
DR Genevisible; A3ANB5; OS.
DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR GO; GO:0005869; C:dynactin complex; IBA:GO_Central.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0009653; P:anatomical structure morphogenesis; IBA:GO_Central.
DR GO; GO:0006325; P:chromatin organization; IEA:UniProtKB-KW.
DR InterPro; IPR004000; Actin.
DR InterPro; IPR043129; ATPase_NBD.
DR PANTHER; PTHR11937; PTHR11937; 1.
DR Pfam; PF00022; Actin; 1.
DR PRINTS; PR00190; ACTIN.
DR SMART; SM00268; ACTIN; 1.
DR SUPFAM; SSF53067; SSF53067; 2.
PE 2: Evidence at transcript level;
KW Chromatin regulator; Cytoplasm; Developmental protein; Nucleus;
KW Reference proteome.
FT CHAIN 1..360
FT /note="Actin-related protein 7"
FT /id="PRO_0000320543"
FT CONFLICT 305
FT /note="C -> Y (in Ref. 6; AK069426)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 360 AA; 39600 MW; 5C91048EDA1F0AEF CRC64;
MEAVVVDAGS KLLKAGIALP DQSPSLVMPS KMKLEVEDGQ MGDGAVVEEV VQPVVRGFVK
DWDAMEDLLN YVLYSNIGWE IGDEGQILFT EPLFTPKALR EQLAQLMFEK FNVSGFYDSE
QAVLSLYAVG RISGCTVDIG HGKIDIAPVC EGAVQHIASK RFDIGGTDLT NLFAEELKKS
NSSVNIDISD VERLKEQYAC CAEDQMAFEA IGSSCRPERH TLPDGQVITI EKERYIVGEA
LFQPHILGLE DYGIVHQLVT SVSNVTPEYH RQLLENTMLC GGTASMTGFE DRFQREANLS
ASAICPSLVK PPEYMPENLA RYSAWLGGAI LAKVVFPQNQ HVTKGDYDET GPSIVHKKCF
