OBGC1_ORYSJ
ID OBGC1_ORYSJ Reviewed; 752 AA.
AC Q0D3S3; Q7EZT3;
DT 22-JAN-2014, integrated into UniProtKB/Swiss-Prot.
DT 17-OCT-2006, sequence version 1.
DT 03-AUG-2022, entry version 102.
DE RecName: Full=Probable GTP-binding protein OBGC1, chloroplastic;
DE Flags: Precursor;
GN Name=OBGC1; OrderedLocusNames=Os07g0669200, LOC_Os07g47300;
GN ORFNames=P0625E02.120;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [4]
RP FUNCTION, AND DISRUPTION PHENOTYPE.
RX PubMed=22380942; DOI=10.1111/j.1365-313x.2012.04976.x;
RA Bang W.Y., Chen J., Jeong I.S., Kim S.W., Kim C.W., Jung H.S., Lee K.H.,
RA Kweon H.S., Yoko I., Shiina T., Bahk J.D.;
RT "Functional characterization of ObgC in ribosome biogenesis during
RT chloroplast development.";
RL Plant J. 71:122-134(2012).
CC -!- FUNCTION: Probable GTP-binding protein that plays a crucial role in
CC chloroplast development and is required for leaf greening during plant
CC growth. {ECO:0000269|PubMed:22380942}.
CC -!- COFACTOR:
CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; Evidence={ECO:0000250};
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast {ECO:0000305}.
CC -!- DISRUPTION PHENOTYPE: Severe chlorotic phenotype during early leaf
CC development. {ECO:0000269|PubMed:22380942}.
CC -!- SIMILARITY: Belongs to the TRAFAC class OBG-HflX-like GTPase
CC superfamily. OBG GTPase family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAC83597.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AP004570; BAC83597.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AP008213; BAF22500.1; -; Genomic_DNA.
DR EMBL; AP014963; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR RefSeq; XP_015644898.1; XM_015789412.1.
DR AlphaFoldDB; Q0D3S3; -.
DR SMR; Q0D3S3; -.
DR STRING; 4530.OS07T0669200-00; -.
DR PaxDb; Q0D3S3; -.
DR PRIDE; Q0D3S3; -.
DR GeneID; 4344232; -.
DR KEGG; osa:4344232; -.
DR eggNOG; KOG1489; Eukaryota.
DR InParanoid; Q0D3S3; -.
DR OrthoDB; 1150635at2759; -.
DR Proteomes; UP000000763; Chromosome 7.
DR Proteomes; UP000059680; Chromosome 7.
DR GO; GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.
DR GO; GO:0005739; C:mitochondrion; IBA:GO_Central.
DR GO; GO:0005525; F:GTP binding; IBA:GO_Central.
DR GO; GO:0003924; F:GTPase activity; IBA:GO_Central.
DR GO; GO:0000287; F:magnesium ion binding; IEA:InterPro.
DR GO; GO:0009658; P:chloroplast organization; IMP:UniProtKB.
DR CDD; cd01898; Obg; 1.
DR Gene3D; 2.70.210.12; -; 1.
DR Gene3D; 3.30.300.350; -; 1.
DR Gene3D; 3.40.50.300; -; 1.
DR HAMAP; MF_01454; GTPase_Obg; 1.
DR InterPro; IPR031167; G_OBG.
DR InterPro; IPR006073; GTP-bd.
DR InterPro; IPR014100; GTP-bd_Obg/CgtA.
DR InterPro; IPR036346; GTP-bd_prot_GTP1/OBG_C_sf.
DR InterPro; IPR006074; GTP1-OBG_CS.
DR InterPro; IPR006169; GTP1_OBG_dom.
DR InterPro; IPR036726; GTP1_OBG_dom_sf.
DR InterPro; IPR045086; OBG_GTPase.
DR InterPro; IPR015349; OCT_dom.
DR InterPro; IPR027417; P-loop_NTPase.
DR PANTHER; PTHR11702; PTHR11702; 1.
DR Pfam; PF09269; DUF1967; 1.
DR Pfam; PF01018; GTP1_OBG; 1.
DR Pfam; PF01926; MMR_HSR1; 1.
DR PRINTS; PR00326; GTP1OBG.
DR SUPFAM; SSF102741; SSF102741; 1.
DR SUPFAM; SSF52540; SSF52540; 1.
DR SUPFAM; SSF82051; SSF82051; 1.
DR TIGRFAMs; TIGR02729; Obg_CgtA; 1.
DR TIGRFAMs; TIGR03595; Obg_CgtA_exten; 1.
DR PROSITE; PS51710; G_OBG; 1.
DR PROSITE; PS00905; GTP1_OBG; 1.
DR PROSITE; PS51883; OBG; 1.
DR PROSITE; PS51881; OCT; 1.
PE 3: Inferred from homology;
KW Chloroplast; GTP-binding; Magnesium; Metal-binding; Nucleotide-binding;
KW Plastid; Reference proteome; Transit peptide.
FT TRANSIT 1..90
FT /note="Chloroplast"
FT /evidence="ECO:0000255"
FT CHAIN 91..752
FT /note="Probable GTP-binding protein OBGC1, chloroplastic"
FT /id="PRO_0000424828"
FT DOMAIN 294..452
FT /note="Obg"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01231"
FT DOMAIN 453..621
FT /note="OBG-type G"
FT DOMAIN 649..728
FT /note="OCT"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01229"
FT REGION 19..121
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 728..752
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT BINDING 459..466
FT /ligand="GTP"
FT /ligand_id="ChEBI:CHEBI:37565"
FT /evidence="ECO:0000250"
FT BINDING 466
FT /ligand="Mg(2+)"
FT /ligand_id="ChEBI:CHEBI:18420"
FT /evidence="ECO:0000250"
FT BINDING 484..488
FT /ligand="GTP"
FT /ligand_id="ChEBI:CHEBI:37565"
FT /evidence="ECO:0000250"
FT BINDING 486
FT /ligand="Mg(2+)"
FT /ligand_id="ChEBI:CHEBI:18420"
FT /evidence="ECO:0000250"
FT BINDING 506..509
FT /ligand="GTP"
FT /ligand_id="ChEBI:CHEBI:37565"
FT /evidence="ECO:0000250"
FT BINDING 573..576
FT /ligand="GTP"
FT /ligand_id="ChEBI:CHEBI:37565"
FT /evidence="ECO:0000250"
FT BINDING 602..604
FT /ligand="GTP"
FT /ligand_id="ChEBI:CHEBI:37565"
FT /evidence="ECO:0000250"
SQ SEQUENCE 752 AA; 82371 MW; 8839FB993107592C CRC64;
MAPAVAVVAA AAAFPFRLFS AEARRNTKGS RSKRGSARPL KPSPPPRPSA SSSAAGGGGA
TTFTRLPLRN APASVEVTLD RFPTANPEPR ASTFTRRNGE RLGDDEEDEE EEEDEVELGL
RGATTFARLP LRDSPDGGDL TIGHFDAGVA PQEGLRSRAI SRQLVEHLDD VEEEEEEQVV
SRLDIFEGAK GREARAFLPD EDDEDDDVVV FDPEYDGYSD DEEFVATAVE QSPRGDAIAV
AELEKLKYDN DDDDDDDDEV VVFHPDDDEE VDVFEDYDDD EEEETKEKGV PAVMRCFDTA
KIYAKAGDGG NGVVAFRREK YVPLGGPSGG DGGRGGNVFV EVDGDMNSLL PFRKSVHFRA
GRGAHGQGRQ QAGAKGDDVV VKVPPGTVVR SAAGDVELLE LMRPGQRALL LPGGRGGRGN
AAFKSGTNKA PRIAEKGEKG PEMWIDLELK LVADVGIVGA PNAGKSTLLT AISAAKPTIA
NYPFTTLLPN LGVVSLDFDA TMVVADLPGL LEGAHRGYGL GHEFLRHSER CSVLVHVVDG
SGEQPEYEFE AVRLELELFS PSLVDKPYIV VYNKMDLPEA SERWNKFQEK LQAEGIEPYC
ISAMNRQGTE DVVLAAYKVL QKDRQRMKDD EEWNGPENLN HVADAIKRER RAPMNEFEIF
HDKGTNTWNV VGAGIERFVQ MTNWQYSESL KRFQHALEAC GVNKTLIKRG VKEGDTVVVG
EMEMVWTDEP SKTRSSKTMN SKDDSVRWPE FG
