OCLOT_ORYSJ
ID OCLOT_ORYSJ Reviewed; 139 AA.
AC Q5Z9Z3; A0A0P0WVX5;
DT 15-JUN-2010, integrated into UniProtKB/Swiss-Prot.
DT 23-NOV-2004, sequence version 1.
DT 03-AUG-2022, entry version 105.
DE RecName: Full=Thioredoxin-like protein Clot;
DE AltName: Full=Thioredoxin Clot;
DE Short=OsClot;
GN OrderedLocusNames=Os06g0320000, LOC_Os06g21550;
GN ORFNames=OsJ_21152, P0592B08.32;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RG The rice full-length cDNA consortium;
RT "Oryza sativa full length cDNA.";
RL Submitted (OCT-2006) to the EMBL/GenBank/DDBJ databases.
RN [6]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=19825616; DOI=10.1093/mp/ssn076;
RA Chibani K., Wingsle G., Jacquot J.P., Gelhaye E., Rouhier N.;
RT "Comparative genomic study of the thioredoxin family in photosynthetic
RT organisms with emphasis on Populus trichocarpa.";
RL Mol. Plant 2:308-322(2009).
CC -!- FUNCTION: Probable thiol-disulfide oxidoreductase that may participate
CC in various redox reactions.
CC -!- SIMILARITY: Belongs to the thioredoxin family. {ECO:0000305}.
CC -!- CAUTION: The active site contains a CPDC motif wich differs from the
CC conserved CGPC motif. {ECO:0000305}.
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DR EMBL; AP003543; BAD61617.1; -; Genomic_DNA.
DR EMBL; AP008212; BAF19423.1; -; Genomic_DNA.
DR EMBL; AP014962; BAS97498.1; -; Genomic_DNA.
DR EMBL; CM000143; EAZ36813.1; -; Genomic_DNA.
DR EMBL; AK242275; BAH01247.1; -; mRNA.
DR RefSeq; XP_015641897.1; XM_015786411.1.
DR AlphaFoldDB; Q5Z9Z3; -.
DR SMR; Q5Z9Z3; -.
DR STRING; 4530.OS06T0320000-01; -.
DR PaxDb; Q5Z9Z3; -.
DR PRIDE; Q5Z9Z3; -.
DR EnsemblPlants; Os06t0320000-01; Os06t0320000-01; Os06g0320000.
DR GeneID; 4340888; -.
DR Gramene; Os06t0320000-01; Os06t0320000-01; Os06g0320000.
DR KEGG; osa:4340888; -.
DR eggNOG; KOG3425; Eukaryota.
DR HOGENOM; CLU_120161_1_0_1; -.
DR InParanoid; Q5Z9Z3; -.
DR OMA; IMVVTHN; -.
DR OrthoDB; 1624076at2759; -.
DR Proteomes; UP000000763; Chromosome 6.
DR Proteomes; UP000007752; Chromosome 6.
DR Proteomes; UP000059680; Chromosome 6.
DR Genevisible; Q5Z9Z3; OS.
DR GO; GO:0005829; C:cytosol; IBA:GO_Central.
DR GO; GO:0004601; F:peroxidase activity; IEA:InterPro.
DR GO; GO:0047134; F:protein-disulfide reductase (NAD(P)) activity; IBA:GO_Central.
DR InterPro; IPR036249; Thioredoxin-like_sf.
DR InterPro; IPR045108; TXNDC17-like.
DR InterPro; IPR010357; TXNDC17_dom.
DR PANTHER; PTHR12452; PTHR12452; 1.
DR Pfam; PF06110; DUF953; 1.
DR SUPFAM; SSF52833; SSF52833; 1.
PE 2: Evidence at transcript level;
KW Disulfide bond; Electron transport; Redox-active center;
KW Reference proteome; Transport.
FT CHAIN 1..139
FT /note="Thioredoxin-like protein Clot"
FT /id="PRO_0000394856"
FT DOMAIN 1..136
FT /note="Thioredoxin"
FT ACT_SITE 49
FT /note="Nucleophile"
FT /evidence="ECO:0000255"
FT ACT_SITE 52
FT /note="Nucleophile"
FT /evidence="ECO:0000255"
FT DISULFID 49..52
FT /note="Redox-active"
FT /evidence="ECO:0000250"
SQ SEQUENCE 139 AA; 15232 MW; 5F5CFF2472BAC46F CRC64;
MTVEKVDATV ADFDAHFDKL FAAGDDAEGK VKLLLFLADR DASSNQTWCP DCNVAEPVIY
DRVEAAAKGK EKDVVLLRAY VGDKPTWRDP AHPWRADPRF RLTGVPTLIR WENGAAAARL
GDDEAHLADK VDAVVNAAN
