ODF3B_DANRE
ID ODF3B_DANRE Reviewed; 257 AA.
AC A3KQA5; B3DIK7; Q1L9G0; Q7T2D9;
DT 11-SEP-2007, integrated into UniProtKB/Swiss-Prot.
DT 11-SEP-2007, sequence version 2.
DT 03-AUG-2022, entry version 80.
DE RecName: Full=Outer dense fiber protein 3-B;
DE AltName: Full=Outer dense fiber of sperm tails protein 3-B;
DE AltName: Full=Outer dense fiber protein 3-like;
GN Name=odf3b; Synonyms=odf3, odf3l;
GN ORFNames=si:dkey-238c7.9, si:dkeyp-1h4.4, zgc:63985;
OS Danio rerio (Zebrafish) (Brachydanio rerio).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC Danionidae; Danioninae; Danio.
OX NCBI_TaxID=7955;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Tuebingen;
RX PubMed=23594743; DOI=10.1038/nature12111;
RA Howe K., Clark M.D., Torroja C.F., Torrance J., Berthelot C., Muffato M.,
RA Collins J.E., Humphray S., McLaren K., Matthews L., McLaren S., Sealy I.,
RA Caccamo M., Churcher C., Scott C., Barrett J.C., Koch R., Rauch G.J.,
RA White S., Chow W., Kilian B., Quintais L.T., Guerra-Assuncao J.A., Zhou Y.,
RA Gu Y., Yen J., Vogel J.H., Eyre T., Redmond S., Banerjee R., Chi J., Fu B.,
RA Langley E., Maguire S.F., Laird G.K., Lloyd D., Kenyon E., Donaldson S.,
RA Sehra H., Almeida-King J., Loveland J., Trevanion S., Jones M., Quail M.,
RA Willey D., Hunt A., Burton J., Sims S., McLay K., Plumb B., Davis J.,
RA Clee C., Oliver K., Clark R., Riddle C., Elliot D., Threadgold G.,
RA Harden G., Ware D., Begum S., Mortimore B., Kerry G., Heath P.,
RA Phillimore B., Tracey A., Corby N., Dunn M., Johnson C., Wood J., Clark S.,
RA Pelan S., Griffiths G., Smith M., Glithero R., Howden P., Barker N.,
RA Lloyd C., Stevens C., Harley J., Holt K., Panagiotidis G., Lovell J.,
RA Beasley H., Henderson C., Gordon D., Auger K., Wright D., Collins J.,
RA Raisen C., Dyer L., Leung K., Robertson L., Ambridge K., Leongamornlert D.,
RA McGuire S., Gilderthorp R., Griffiths C., Manthravadi D., Nichol S.,
RA Barker G., Whitehead S., Kay M., Brown J., Murnane C., Gray E.,
RA Humphries M., Sycamore N., Barker D., Saunders D., Wallis J., Babbage A.,
RA Hammond S., Mashreghi-Mohammadi M., Barr L., Martin S., Wray P.,
RA Ellington A., Matthews N., Ellwood M., Woodmansey R., Clark G., Cooper J.,
RA Tromans A., Grafham D., Skuce C., Pandian R., Andrews R., Harrison E.,
RA Kimberley A., Garnett J., Fosker N., Hall R., Garner P., Kelly D., Bird C.,
RA Palmer S., Gehring I., Berger A., Dooley C.M., Ersan-Urun Z., Eser C.,
RA Geiger H., Geisler M., Karotki L., Kirn A., Konantz J., Konantz M.,
RA Oberlander M., Rudolph-Geiger S., Teucke M., Lanz C., Raddatz G.,
RA Osoegawa K., Zhu B., Rapp A., Widaa S., Langford C., Yang F.,
RA Schuster S.C., Carter N.P., Harrow J., Ning Z., Herrero J., Searle S.M.,
RA Enright A., Geisler R., Plasterk R.H., Lee C., Westerfield M.,
RA de Jong P.J., Zon L.I., Postlethwait J.H., Nusslein-Volhard C.,
RA Hubbard T.J., Roest Crollius H., Rogers J., Stemple D.L.;
RT "The zebrafish reference genome sequence and its relationship to the human
RT genome.";
RL Nature 496:498-503(2013).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC TISSUE=Kidney;
RG NIH - Zebrafish Gene Collection (ZGC) project;
RL Submitted (JUL-2003) to the EMBL/GenBank/DDBJ databases.
CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000250}. Note=Expressed in the
CC cytoplasmic lobe of spermatids. {ECO:0000250}.
CC -!- SIMILARITY: Belongs to the ODF3 family. {ECO:0000305}.
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DR EMBL; BX571879; CAM56632.1; -; Genomic_DNA.
DR EMBL; CR318588; CAK11331.1; -; Genomic_DNA.
DR EMBL; BC054587; AAH54587.1; -; mRNA.
DR EMBL; BC163161; AAI63161.1; -; mRNA.
DR EMBL; BC163187; AAI63187.1; -; mRNA.
DR RefSeq; NP_956252.1; NM_199958.1.
DR RefSeq; XP_005159056.1; XM_005158999.3.
DR AlphaFoldDB; A3KQA5; -.
DR IntAct; A3KQA5; 1.
DR MINT; A3KQA5; -.
DR STRING; 7955.ENSDARP00000108259; -.
DR PaxDb; A3KQA5; -.
DR PeptideAtlas; A3KQA5; -.
DR Ensembl; ENSDART00000062156; ENSDARP00000062155; ENSDARG00000042396.
DR Ensembl; ENSDART00000175288; ENSDARP00000144363; ENSDARG00000042396.
DR Ensembl; ENSDART00000191529; ENSDARP00000153006; ENSDARG00000116899.
DR GeneID; 335524; -.
DR KEGG; dre:335524; -.
DR CTD; 440836; -.
DR ZFIN; ZDB-GENE-030131-7464; odf3b.
DR eggNOG; ENOG502QUIJ; Eukaryota.
DR GeneTree; ENSGT00940000161995; -.
DR HOGENOM; CLU_088282_1_0_1; -.
DR InParanoid; A3KQA5; -.
DR OMA; GQYSPEH; -.
DR OrthoDB; 920847at2759; -.
DR PhylomeDB; A3KQA5; -.
DR TreeFam; TF325804; -.
DR PRO; PR:A3KQA5; -.
DR Proteomes; UP000000437; Genome assembly.
DR Proteomes; UP000814640; Chromosome 18.
DR Bgee; ENSDARG00000042396; Expressed in testis and 12 other tissues.
DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR GO; GO:0005856; C:cytoskeleton; IBA:GO_Central.
DR InterPro; IPR010736; SHIPPO-rpt.
DR Pfam; PF07004; SHIPPO-rpt; 4.
PE 2: Evidence at transcript level;
KW Cytoplasm; Reference proteome; Repeat.
FT CHAIN 1..257
FT /note="Outer dense fiber protein 3-B"
FT /id="PRO_0000299466"
FT REPEAT 103..129
FT /note="STPGR 1"
FT REPEAT 182..207
FT /note="STPGR 2"
FT REPEAT 218..243
FT /note="STPGR 3"
FT CONFLICT 116
FT /note="A -> V (in Ref. 1; CAM56632)"
FT /evidence="ECO:0000305"
FT CONFLICT 248
FT /note="V -> I (in Ref. 1; CAM56632 and 2; AAH54587)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 257 AA; 27896 MW; B641B7310CE7E114 CRC64;
MSPVDVWVGS WRPHKPRGPI AAMYNSPGPT YALPGATGMN NHDPRMQKGP AFSFGIRHHN
FHGNYSPGPG YLVPSNITRV GRDGTPAYSV YGRRKDIQPF QTPGPGSYSP ENATKATYLS
PPAFTLSART KLFRNDQTPG PAAYMLPPVL GPKVVNKTSA PNVSFSGRSA IGSFHEDLRK
TPGPGTYQVV DPCVYKHKGP QYSMTGRNMM PGDMTKKPGP GAHYPEMVCF TRAKAPSFSF
GIRHSEYVAP TIVDGED
