ODP1_CORGL
ID ODP1_CORGL Reviewed; 922 AA.
AC Q8NNF6; Q6M3J1;
DT 28-NOV-2012, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2002, sequence version 1.
DT 03-AUG-2022, entry version 125.
DE RecName: Full=Pyruvate dehydrogenase E1 component;
DE Short=E1p;
DE Short=PDH E1 component;
DE EC=1.2.4.1;
GN Name=aceE; OrderedLocusNames=Cgl2248, cg2466;
OS Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / BCRC 11384 /
OS JCM 1318 / LMG 3730 / NCIMB 10025).
OC Bacteria; Actinobacteria; Corynebacteriales; Corynebacteriaceae;
OC Corynebacterium.
OX NCBI_TaxID=196627;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC 13032 / DSM 20300 / BCRC 11384 / JCM 1318 / LMG 3730 / NCIMB
RC 10025;
RX PubMed=12743753; DOI=10.1007/s00253-003-1328-1;
RA Ikeda M., Nakagawa S.;
RT "The Corynebacterium glutamicum genome: features and impacts on
RT biotechnological processes.";
RL Appl. Microbiol. Biotechnol. 62:99-109(2003).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC 13032 / DSM 20300 / BCRC 11384 / JCM 1318 / LMG 3730 / NCIMB
RC 10025;
RX PubMed=12948626; DOI=10.1016/s0168-1656(03)00154-8;
RA Kalinowski J., Bathe B., Bartels D., Bischoff N., Bott M., Burkovski A.,
RA Dusch N., Eggeling L., Eikmanns B.J., Gaigalat L., Goesmann A.,
RA Hartmann M., Huthmacher K., Kraemer R., Linke B., McHardy A.C., Meyer F.,
RA Moeckel B., Pfefferle W., Puehler A., Rey D.A., Rueckert C., Rupp O.,
RA Sahm H., Wendisch V.F., Wiegraebe I., Tauch A.;
RT "The complete Corynebacterium glutamicum ATCC 13032 genome sequence and its
RT impact on the production of L-aspartate-derived amino acids and vitamins.";
RL J. Biotechnol. 104:5-25(2003).
RN [3]
RP IDENTIFICATION IN THE ODH/PDH COMPLEX.
RC STRAIN=ATCC 13032 / DSM 20300 / BCRC 11384 / JCM 1318 / LMG 3730 / NCIMB
RC 10025;
RX PubMed=16522631; DOI=10.1074/jbc.m512515200;
RA Niebisch A., Kabus A., Schultz C., Weil B., Bott M.;
RT "Corynebacterial protein kinase G controls 2-oxoglutarate dehydrogenase
RT activity via the phosphorylation status of the OdhI protein.";
RL J. Biol. Chem. 281:12300-12307(2006).
RN [4]
RP FUNCTION, CATALYTIC ACTIVITY, KINETIC PARAMETERS, AND DISRUPTION PHENOTYPE.
RC STRAIN=ATCC 13032 / DSM 20300 / BCRC 11384 / JCM 1318 / LMG 3730 / NCIMB
RC 10025;
RX PubMed=20675489; DOI=10.1128/jb.00597-10;
RA Hoffelder M., Raasch K., van Ooyen J., Eggeling L.;
RT "The E2 domain of OdhA of Corynebacterium glutamicum has
RT succinyltransferase activity dependent on lipoyl residues of the
RT acetyltransferase AceF.";
RL J. Bacteriol. 192:5203-5211(2010).
CC -!- FUNCTION: Is a specific component of the pyruvate dehydrogenase (PDH)
CC complex, that catalyzes the overall conversion of pyruvate to acetyl-
CC CoA and CO(2). AceE has reductase activity with pyruvate but does not
CC react with 2-oxoglutarate. {ECO:0000269|PubMed:20675489}.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=(R)-N(6)-lipoyl-L-lysyl-[dihydrolipoyllysine-residue
CC acetyltransferase] + H(+) + pyruvate = (R)-N(6)-(S(8)-
CC acetyldihydrolipoyl)-L-lysyl-[dihydrolipoyllysine-residue
CC acetyltransferase] + CO2; Xref=Rhea:RHEA:19189, Rhea:RHEA-COMP:10480,
CC Rhea:RHEA-COMP:10481, ChEBI:CHEBI:15361, ChEBI:CHEBI:15378,
CC ChEBI:CHEBI:16526, ChEBI:CHEBI:83099, ChEBI:CHEBI:83111; EC=1.2.4.1;
CC Evidence={ECO:0000269|PubMed:20675489};
CC -!- COFACTOR:
CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; Evidence={ECO:0000250};
CC -!- COFACTOR:
CC Name=thiamine diphosphate; Xref=ChEBI:CHEBI:58937;
CC Evidence={ECO:0000250};
CC -!- BIOPHYSICOCHEMICAL PROPERTIES:
CC Kinetic parameters:
CC KM=0.066 mM for pyruvate {ECO:0000269|PubMed:20675489};
CC -!- SUBUNIT: Homodimer (By similarity). Part of an unusual ODH/PDH
CC supercomplex, consisting of AceE (E1), AceF (E2), and Lpd (E3) together
CC with OdhA (E1+E2). {ECO:0000250, ECO:0000269|PubMed:16522631}.
CC -!- DISRUPTION PHENOTYPE: Cells lacking this gene display no PDH activity.
CC {ECO:0000269|PubMed:20675489}.
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; BA000036; BAB99641.1; -; Genomic_DNA.
DR EMBL; BX927154; CAF20589.1; -; Genomic_DNA.
DR RefSeq; NP_601447.1; NC_003450.3.
DR RefSeq; WP_011014985.1; NC_006958.1.
DR AlphaFoldDB; Q8NNF6; -.
DR SMR; Q8NNF6; -.
DR STRING; 196627.cg2466; -.
DR PRIDE; Q8NNF6; -.
DR KEGG; cgb:cg2466; -.
DR KEGG; cgl:Cgl2248; -.
DR PATRIC; fig|196627.13.peg.2180; -.
DR eggNOG; COG2609; Bacteria.
DR HOGENOM; CLU_009154_2_0_11; -.
DR OMA; PDEYRTF; -.
DR BRENDA; 1.2.1.104; 960.
DR BRENDA; 1.2.4.1; 960.
DR SABIO-RK; Q8NNF6; -.
DR Proteomes; UP000000582; Chromosome.
DR GO; GO:0000287; F:magnesium ion binding; IEA:UniProt.
DR GO; GO:0004739; F:pyruvate dehydrogenase (acetyl-transferring) activity; IEA:UniProtKB-EC.
DR GO; GO:0006096; P:glycolytic process; IEA:UniProtKB-KW.
DR CDD; cd02017; TPP_E1_EcPDC_like; 1.
DR Gene3D; 3.40.50.920; -; 1.
DR InterPro; IPR035807; PDC_E1_N.
DR InterPro; IPR004660; PDH_E1.
DR InterPro; IPR041621; PDH_E1_M.
DR InterPro; IPR029061; THDP-binding.
DR InterPro; IPR009014; Transketo_C/PFOR_II.
DR InterPro; IPR005474; Transketolase_N.
DR PANTHER; PTHR43825:SF3; PTHR43825:SF3; 1.
DR Pfam; PF17831; PDH_E1_M; 1.
DR Pfam; PF00456; Transketolase_N; 1.
DR PIRSF; PIRSF000156; Pyruvate_dh_E1; 1.
DR SUPFAM; SSF52518; SSF52518; 2.
DR SUPFAM; SSF52922; SSF52922; 1.
DR TIGRFAMs; TIGR00759; aceE; 1.
PE 1: Evidence at protein level;
KW Glycolysis; Magnesium; Oxidoreductase; Pyruvate; Reference proteome;
KW Thiamine pyrophosphate.
FT CHAIN 1..922
FT /note="Pyruvate dehydrogenase E1 component"
FT /id="PRO_0000420522"
SQ SEQUENCE 922 AA; 102826 MW; 5B949B2A72B855BF CRC64;
MADQAKLGGK PSDDSNFAMI RDGVASYLND SDPEETNEWM DSLDGLLQES SPERARYLML
RLLERASAKR VSLPPMTSTD YVNTIPTSME PEFPGDEEME KRYRRWIRWN AAIMVHRAQR
PGIGVGGHIS TYAGAAPLYE VGFNHFFRGK DHPGGGDQIF FQGHASPGMY ARAFMEGRLS
EDDLDGFRQE VSREQGGIPS YPHPHGMKDF WEFPTVSMGL GPMDAIYQAR FNRYLENRGI
KDTSDQHVWA FLGDGEMDEP ESRGLIQQAA LNNLDNLTFV VNCNLQRLDG PVRGNTKIIQ
ELESFFRGAG WSVIKVVWGR EWDELLEKDQ DGALVEIMNN TSDGDYQTFK ANDGAYVREH
FFGRDPRTAK LVENMTDEEI WKLPRGGHDY RKVYAAYKRA LETKDRPTVI LAHTIKGYGL
GHNFEGRNAT HQMKKLTLDD LKLFRDKQGI PITDEQLEKD PYLPPYYHPG EDAPEIKYMK
ERRAALGGYL PERRENYDPI QVPPLDKLRS VRKGSGKQQI ATTMATVRTF KELMRDKGLA
DRLVPIIPDE ARTFGLDSWF PTLKIYNPHG QNYVPVDHDL MLSYREAPEG QILHEGINEA
GSVASFIAAG TSYATHGKAM IPLYIFYSMF GFQRTGDSIW AAADQMARGF LLGATAGRTT
LTGEGLQHMD GHSPVLASTN EGVETYDPSF AYEIAHLVHR GIDRMYGPGK GEDVIYYITI
YNEPTPQPAE PEGLDVEGLH KGIYLYSRGE GTGHEANILA SGVGMQWALK AASILEADYG
VRANIYSATS WVNLARDGAA RNKAQLRNPG ADAGEAFVTT QLKQTSGPYV AVSDFSTDLP
NQIREWVPGD YTVLGADGFG FSDTRPAARR FFNIDAESIV VAVLNSLARE GKIDVSVAAQ
AAEKFKLDDP TSVSVDPNAP EE