OGL_DICD3
ID OGL_DICD3 Reviewed; 388 AA.
AC P21258; E0SDE7;
DT 01-MAY-1991, integrated into UniProtKB/Swiss-Prot.
DT 30-NOV-2010, sequence version 2.
DT 03-AUG-2022, entry version 91.
DE RecName: Full=Oligogalacturonate lyase;
DE EC=4.2.2.6;
GN Name=ogl; OrderedLocusNames=Dda3937_03686;
OS Dickeya dadantii (strain 3937) (Erwinia chrysanthemi (strain 3937)).
OC Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
OC Pectobacteriaceae; Dickeya.
OX NCBI_TaxID=198628;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RC STRAIN=3937;
RX PubMed=2695393; DOI=10.1016/0378-1119(89)90472-1;
RA Reverchon S., Huang Y., Bourson C., Robert-Baudouy J.;
RT "Nucleotide sequences of the Erwinia chrysanthemi ogl and pelE genes
RT negatively regulated by the kdgR gene product.";
RL Gene 85:125-134(1989).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=3937;
RX PubMed=21217001; DOI=10.1128/jb.01513-10;
RA Glasner J.D., Yang C.H., Reverchon S., Hugouvieux-Cotte-Pattat N.,
RA Condemine G., Bohin J.P., Van Gijsegem F., Yang S., Franza T., Expert D.,
RA Plunkett G. III, San Francisco M.J., Charkowski A.O., Py B., Bell K.,
RA Rauscher L., Rodriguez-Palenzuela P., Toussaint A., Holeva M.C., He S.Y.,
RA Douet V., Boccara M., Blanco C., Toth I., Anderson B.D., Biehl B.S.,
RA Mau B., Flynn S.M., Barras F., Lindeberg M., Birch P.R., Tsuyumu S.,
RA Shi X., Hibbing M., Yap M.N., Carpentier M., Dassa E., Umehara M.,
RA Kim J.F., Rusch M., Soni P., Mayhew G.F., Fouts D.E., Gill S.R.,
RA Blattner F.R., Keen N.T., Perna N.T.;
RT "Genome sequence of the plant-pathogenic bacterium Dickeya dadantii 3937.";
RL J. Bacteriol. 193:2076-2077(2011).
CC -!- FUNCTION: Involved in degradation of pectin, which causes soft-rod
CC disease in plants.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=4-(4-deoxy-alpha-D-galact-4-enuronosyl)-D-galacturonate = 2 5-
CC dehydro-4-deoxy-D-glucuronate; Xref=Rhea:RHEA:20269,
CC ChEBI:CHEBI:17117, ChEBI:CHEBI:60189; EC=4.2.2.6;
CC -!- PATHWAY: Glycan metabolism; pectin degradation; 2-dehydro-3-deoxy-D-
CC gluconate from pectin: step 3/5.
CC -!- SUBCELLULAR LOCATION: Periplasm {ECO:0000305}.
CC -!- INDUCTION: By galacturonate and polygalacturonate, and subjected to
CC catabolite repression.
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DR EMBL; M33583; AAA24825.1; -; Genomic_DNA.
DR EMBL; CP002038; ADM98639.1; -; Genomic_DNA.
DR PIR; JQ0189; JQ0189.
DR RefSeq; WP_013318086.1; NC_014500.1.
DR AlphaFoldDB; P21258; -.
DR SMR; P21258; -.
DR STRING; 198628.Dda3937_03686; -.
DR CAZy; PL22; Polysaccharide Lyase Family 22.
DR PRIDE; P21258; -.
DR EnsemblBacteria; ADM98639; ADM98639; Dda3937_03686.
DR GeneID; 9733874; -.
DR KEGG; ddd:Dda3937_03686; -.
DR PATRIC; fig|198628.6.peg.2418; -.
DR eggNOG; COG0823; Bacteria.
DR HOGENOM; CLU_057268_0_0_6; -.
DR OMA; WLVNEDG; -.
DR OrthoDB; 821953at2; -.
DR BioCyc; DDAD198628:DDA3937_RS11450-MON; -.
DR BioCyc; MetaCyc:MON-15657; -.
DR UniPathway; UPA00545; UER00825.
DR Proteomes; UP000006859; Chromosome.
DR GO; GO:0042597; C:periplasmic space; IEA:UniProtKB-SubCell.
DR GO; GO:0047487; F:oligogalacturonide lyase activity; IDA:ASAP.
DR GO; GO:0045490; P:pectin catabolic process; IDA:ASAP.
DR Gene3D; 2.130.10.10; -; 1.
DR InterPro; IPR027946; Ogl_dom.
DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom_sf.
DR Pfam; PF14583; Pectate_lyase22; 1.
PE 2: Evidence at transcript level;
KW Lyase; Periplasm; Reference proteome.
FT CHAIN 1..388
FT /note="Oligogalacturonate lyase"
FT /id="PRO_0000058034"
FT CONFLICT 316
FT /note="I -> T (in Ref. 1; AAA24825)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 388 AA; 44186 MW; 6E0C73737E32A089 CRC64;
MAKGKKLSFS FHTYQDSVTG TEVVRLTPPD VICHRNYFYQ KCFSNDGSKL LFGGAFDGPW
NYYLLDLKTQ QATQLTEGTG DNTFGGFLSP DDDALYYVKN VRNLMRVDLN TLEETNIYQV
PDDWVGYGTW VANSDCTKMV GIEIKKEDWK PLTDWKKFQE FYFTNPCCRL IRIDLKTGEA
TTILKENQWL GHPIYRPGDD NTVAFCHEGP HDLVDARMWF INEDGSNMRK VKEHAPGESC
THEFWVPNGS ALAYVSYLKG STNRFICSVD PVTLENRQLT EMPPCSHLMS NYDGTLMVGD
GCNAPVDVKD DGGYKIENDP FLYVFNMKTG KHFQVAQHNT SWEVLEGDRQ VTHPHPSFTP
DDKHILFTSD VDGKPALYLA KVPDSVWQ