OML3_ORYSJ
ID OML3_ORYSJ Reviewed; 955 AA.
AC Q75M35; A0A0P0WGV2;
DT 31-MAY-2011, integrated into UniProtKB/Swiss-Prot.
DT 15-FEB-2005, sequence version 2.
DT 03-AUG-2022, entry version 113.
DE RecName: Full=Protein MEI2-like 3;
DE Short=OML3;
DE AltName: Full=MEI2-like protein 3;
GN Name=ML3; OrderedLocusNames=Os05g0102800, LOC_Os05g01240;
GN ORFNames=OsJ_16784, P0036D10.18, P0668H12.3;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16461585; DOI=10.1105/tpc.105.037622;
RA Kawakatsu T., Itoh J., Miyoshi K., Kurata N., Alvarez N., Veit B.,
RA Nagato Y.;
RT "PLASTOCHRON2 regulates leaf initiation and maturation in rice.";
RL Plant Cell 18:612-625(2006).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16261349; DOI=10.1007/s00438-005-0039-y;
RA Cheng C.-H., Chung M.C., Liu S.-M., Chen S.-K., Kao F.Y., Lin S.-J.,
RA Hsiao S.-H., Tseng I.C., Hsing Y.-I.C., Wu H.-P., Chen C.-S., Shaw J.-F.,
RA Wu J., Matsumoto T., Sasaki T., Chen H.-C., Chow T.-Y.;
RT "A fine physical map of the rice chromosome 5.";
RL Mol. Genet. Genomics 274:337-345(2005).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [5]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [7]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [8]
RP GENE FAMILY.
RX PubMed=15356386; DOI=10.1023/b:plan.0000040819.33383.b6;
RA Anderson G.H., Alvarez N.D., Gilman C., Jeffares D.C., Trainor V.C.,
RA Hanson M.R., Veit B.;
RT "Diversification of genes encoding mei2 -like RNA binding proteins in
RT plants.";
RL Plant Mol. Biol. 54:653-670(2004).
CC -!- FUNCTION: Probable RNA-binding protein that may play a role in growth
CC regulation. {ECO:0000250}.
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DR EMBL; AB244278; BAE79765.1; -; mRNA.
DR EMBL; AC073405; AAW56930.1; -; Genomic_DNA.
DR EMBL; AC084818; AAS88822.2; -; Genomic_DNA.
DR EMBL; AP008211; BAF16302.1; -; Genomic_DNA.
DR EMBL; AP014961; BAS91840.1; -; Genomic_DNA.
DR EMBL; CM000142; EEE62003.1; -; Genomic_DNA.
DR EMBL; AK120322; BAG99966.1; -; mRNA.
DR EMBL; AK121634; BAH00583.1; -; mRNA.
DR RefSeq; XP_015640244.1; XM_015784758.1.
DR RefSeq; XP_015640245.1; XM_015784759.1.
DR RefSeq; XP_015640246.1; XM_015784760.1.
DR AlphaFoldDB; Q75M35; -.
DR SMR; Q75M35; -.
DR STRING; 4530.OS05T0102800-01; -.
DR PaxDb; Q75M35; -.
DR PRIDE; Q75M35; -.
DR EnsemblPlants; Os05t0102800-01; Os05t0102800-01; Os05g0102800.
DR EnsemblPlants; Os05t0102800-02; Os05t0102800-02; Os05g0102800.
DR EnsemblPlants; Os05t0102800-03; Os05t0102800-03; Os05g0102800.
DR GeneID; 4337535; -.
DR Gramene; Os05t0102800-01; Os05t0102800-01; Os05g0102800.
DR Gramene; Os05t0102800-02; Os05t0102800-02; Os05g0102800.
DR Gramene; Os05t0102800-03; Os05t0102800-03; Os05g0102800.
DR KEGG; osa:4337535; -.
DR eggNOG; KOG4660; Eukaryota.
DR InParanoid; Q75M35; -.
DR OMA; DKWCRPM; -.
DR OrthoDB; 1464915at2759; -.
DR Proteomes; UP000000763; Chromosome 5.
DR Proteomes; UP000007752; Chromosome 5.
DR Proteomes; UP000059680; Chromosome 5.
DR ExpressionAtlas; Q75M35; baseline and differential.
DR Genevisible; Q75M35; OS.
DR GO; GO:0016607; C:nuclear speck; IBA:GO_Central.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0000398; P:mRNA splicing, via spliceosome; IBA:GO_Central.
DR CDD; cd12524; RRM1_MEI2_like; 1.
DR CDD; cd12531; RRM3_MEI2_like; 1.
DR Gene3D; 3.30.70.330; -; 2.
DR InterPro; IPR034453; MEI2-like_RRM1.
DR InterPro; IPR034454; MEI2-like_RRM3.
DR InterPro; IPR007201; Mei2-like_Rrm_C.
DR InterPro; IPR012677; Nucleotide-bd_a/b_plait_sf.
DR InterPro; IPR035979; RBD_domain_sf.
DR InterPro; IPR000504; RRM_dom.
DR Pfam; PF00076; RRM_1; 2.
DR Pfam; PF04059; RRM_2; 1.
DR SMART; SM00360; RRM; 3.
DR SUPFAM; SSF54928; SSF54928; 2.
DR PROSITE; PS50102; RRM; 2.
PE 2: Evidence at transcript level;
KW Reference proteome; Repeat; RNA-binding.
FT CHAIN 1..955
FT /note="Protein MEI2-like 3"
FT /id="PRO_0000409347"
FT DOMAIN 270..343
FT /note="RRM 1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00176"
FT DOMAIN 355..428
FT /note="RRM 2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00176"
FT REGION 64..83
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 436..465
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 897..955
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 449..465
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 912..955
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 955 AA; 104522 MW; 107E786A60F8A7B2 CRC64;
MVIASGAIDR RHLSPFTPTS DDSSSSFFSQ DLVPTERQVG FWNSESMVDH KGSKSVFASP
LEKIQPNGAN HAGDPETPGG QAFKGLDILS LSNLMRQENA SGSPSLSWGE ILTNPISRLG
LSTRETAFVE PTTADQHVPG YGKGLSSSSL SEVFSGKSRE IVSGVLCQST GTHTSIYDSD
EPLESMEAIE AQTIGDLLPD DDDDLISGIA DGFEFTGMST NQDDADEDIF CTGGGMELEN
NDSVKGDKVQ DGSFKSQISS GHSINKQPSR TLVVRNITAN IEDSDLTVLF QQYGDIRMLY
TSFKHHGFVT VSYYDIRAAQ NAMRALHSKP LGLMKLDVQF SFPKENVPGK DIDKGMLVVS
NIDSSISNDD LLQMLSVYGD VKEISSSPIS CTKKFVEFYD VRAAEEALHD LNKGGISGPK
FKVELSQHGE AGSCLRQQHS REWKQDSLPH QPKNSSPGTI GKLGTKCQDN STVHNLFSPV
NQQLESPTQC ISTTGPQILS SPIRIKSTLQ HNNQASVGDL SGPLGQGNFG RGIQTLHPRS
LPEHHNRICN NSKSMTVSGR NASSRQDGVD HNIQKVGPAG FCGHSFDQNN EAFGFTEIGS
CPLHGYHYTW NHTNVFPQSP SAPILWSNLQ HPMHVHSYPG VPPHMLNTGS YPMDQHHLGS
APDNGGSFGN VHSFHPGSLG SIGLHGSPQL YPSELSAFAS SRGNFREALF SPVGGGFQSL
QQMCNAINGR NPMIHVSTSY DATNDRMRSR RHDGNPAQSE NKRQFELDID RIAKGEDSRT
TLMIKNIPNK YNCKLLLAVI DENHRGTYDF IYLPIDFKNK CNVGYAFINM TDPQHIIPFY
KTFNGKKWEK FNSEKVASLA YARIQGRSAL IAHFQNSSLM NEDKWCRPML FHKDGPNAGD
QEPFPVGNNV RSRAGRNRSL ISLDTKDASP SSSPDQESNS VGTANSTCRT TLEQT
