OMPB1_NEIMB
ID OMPB1_NEIMB Reviewed; 331 AA.
AC P30690;
DT 01-APR-1993, integrated into UniProtKB/Swiss-Prot.
DT 01-APR-1993, sequence version 1.
DT 25-MAY-2022, entry version 136.
DE RecName: Full=Major outer membrane protein P.IB;
DE Short=PIB;
DE Short=Protein IB;
DE AltName: Full=Class 3 protein;
DE AltName: Full=Porin;
DE Flags: Precursor;
GN Name=porB; OrderedLocusNames=NMB2039;
OS Neisseria meningitidis serogroup B (strain MC58).
OC Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae;
OC Neisseria.
OX NCBI_TaxID=122586;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RC STRAIN=MC58;
RX PubMed=1330818; DOI=10.1016/0378-1097(92)90644-4;
RA Ward M.J., Lambden P.R., Heckels J.E.;
RT "Sequence analysis and relationships between meningococcal class 3 serotype
RT proteins and other porins from pathogenic and non-pathogenic Neisseria
RT species.";
RL FEMS Microbiol. Lett. 73:283-289(1992).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=MC58;
RX PubMed=10710307; DOI=10.1126/science.287.5459.1809;
RA Tettelin H., Saunders N.J., Heidelberg J.F., Jeffries A.C., Nelson K.E.,
RA Eisen J.A., Ketchum K.A., Hood D.W., Peden J.F., Dodson R.J., Nelson W.C.,
RA Gwinn M.L., DeBoy R.T., Peterson J.D., Hickey E.K., Haft D.H.,
RA Salzberg S.L., White O., Fleischmann R.D., Dougherty B.A., Mason T.M.,
RA Ciecko A., Parksey D.S., Blair E., Cittone H., Clark E.B., Cotton M.D.,
RA Utterback T.R., Khouri H.M., Qin H., Vamathevan J.J., Gill J., Scarlato V.,
RA Masignani V., Pizza M., Grandi G., Sun L., Smith H.O., Fraser C.M.,
RA Moxon E.R., Rappuoli R., Venter J.C.;
RT "Complete genome sequence of Neisseria meningitidis serogroup B strain
RT MC58.";
RL Science 287:1809-1815(2000).
RN [3]
RP IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
RX PubMed=17038831; DOI=10.4161/hv.1.2.1651;
RA Vipond C., Wheeler J.X., Jones C., Feavers I.M., Suker J.;
RT "Characterization of the protein content of a meningococcal outer membrane
RT vesicle vaccine by polyacrylamide gel electrophoresis and mass
RT spectrometry.";
RL Hum. Vaccin. 1:80-84(2005).
RN [4]
RP IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
RC STRAIN=NZ98/254 / Serogroup B;
RX PubMed=16645985; DOI=10.1002/pmic.200500821;
RA Vipond C., Suker J., Jones C., Tang C., Feavers I.M., Wheeler J.X.;
RT "Proteomic analysis of a meningococcal outer membrane vesicle vaccine
RT prepared from the group B strain NZ98/254.";
RL Proteomics 6:3400-3413(2006).
CC -!- FUNCTION: Serves as a slightly cation selective porin.
CC -!- SUBUNIT: Homotrimer.
CC -!- SUBCELLULAR LOCATION: Cell outer membrane; Multi-pass membrane protein.
CC -!- MISCELLANEOUS: Present in outer membrane vesicle formulations which are
CC used as vaccines in human.
CC -!- SIMILARITY: Belongs to the Gram-negative porin family. {ECO:0000305}.
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DR EMBL; X65532; CAA46502.1; -; Genomic_DNA.
DR EMBL; AE002098; AAF42360.1; -; Genomic_DNA.
DR PIR; S21407; S21407.
DR RefSeq; NP_275030.1; NC_003112.2.
DR RefSeq; WP_002244345.1; NC_003112.2.
DR PDB; 3WI4; X-ray; 3.32 A; A=20-331.
DR PDB; 3WI5; X-ray; 2.40 A; A=20-331.
DR PDBsum; 3WI4; -.
DR PDBsum; 3WI5; -.
DR AlphaFoldDB; P30690; -.
DR SMR; P30690; -.
DR STRING; 122586.NMB2039; -.
DR PaxDb; P30690; -.
DR EnsemblBacteria; AAF42360; AAF42360; NMB2039.
DR KEGG; nme:NMB2039; -.
DR PATRIC; fig|122586.8.peg.2608; -.
DR HOGENOM; CLU_038238_4_0_4; -.
DR OMA; YKADAMS; -.
DR Reactome; R-HSA-1236974; ER-Phagosome pathway.
DR Reactome; R-HSA-166058; MyD88:MAL(TIRAP) cascade initiated on plasma membrane.
DR Reactome; R-HSA-168179; Toll Like Receptor TLR1:TLR2 Cascade.
DR Reactome; R-HSA-5602498; MyD88 deficiency (TLR2/4).
DR Reactome; R-HSA-5603041; IRAK4 deficiency (TLR2/4).
DR Proteomes; UP000000425; Chromosome.
DR GO; GO:0009279; C:cell outer membrane; IEA:UniProtKB-SubCell.
DR GO; GO:0046930; C:pore complex; IEA:UniProtKB-KW.
DR GO; GO:0015288; F:porin activity; IEA:UniProtKB-KW.
DR GO; GO:0034220; P:ion transmembrane transport; IEA:InterPro.
DR CDD; cd00342; gram_neg_porins; 1.
DR Gene3D; 2.40.160.10; -; 1.
DR InterPro; IPR033900; Gram_neg_porin_domain.
DR InterPro; IPR023614; Porin_dom_sf.
DR InterPro; IPR001702; Porin_Gram-ve.
DR InterPro; IPR013793; Porin_Gram-ve_CS.
DR InterPro; IPR002299; Porin_Neis.
DR Pfam; PF00267; Porin_1; 1.
DR PRINTS; PR00182; ECOLNEIPORIN.
DR PRINTS; PR00184; NEISSPPORIN.
DR PROSITE; PS00576; GRAM_NEG_PORIN; 1.
PE 1: Evidence at protein level;
KW 3D-structure; Cell outer membrane; Ion transport; Membrane; Porin;
KW Reference proteome; Signal; Transmembrane; Transmembrane beta strand;
KW Transport.
FT SIGNAL 1..19
FT /evidence="ECO:0000250"
FT CHAIN 20..331
FT /note="Major outer membrane protein P.IB"
FT /id="PRO_0000025281"
FT STRAND 21..39
FT /evidence="ECO:0007829|PDB:3WI5"
FT STRAND 41..55
FT /evidence="ECO:0007829|PDB:3WI5"
FT STRAND 59..69
FT /evidence="ECO:0007829|PDB:3WI5"
FT STRAND 72..81
FT /evidence="ECO:0007829|PDB:3WI5"
FT STRAND 94..102
FT /evidence="ECO:0007829|PDB:3WI5"
FT STRAND 105..113
FT /evidence="ECO:0007829|PDB:3WI5"
FT HELIX 116..118
FT /evidence="ECO:0007829|PDB:3WI5"
FT TURN 130..134
FT /evidence="ECO:0007829|PDB:3WI5"
FT TURN 136..140
FT /evidence="ECO:0007829|PDB:3WI5"
FT STRAND 143..150
FT /evidence="ECO:0007829|PDB:3WI5"
FT STRAND 157..164
FT /evidence="ECO:0007829|PDB:3WI5"
FT HELIX 166..169
FT /evidence="ECO:0007829|PDB:3WI5"
FT STRAND 176..185
FT /evidence="ECO:0007829|PDB:3WI5"
FT STRAND 188..200
FT /evidence="ECO:0007829|PDB:3WI5"
FT STRAND 203..205
FT /evidence="ECO:0007829|PDB:3WI5"
FT STRAND 208..222
FT /evidence="ECO:0007829|PDB:3WI5"
FT STRAND 225..240
FT /evidence="ECO:0007829|PDB:3WI5"
FT STRAND 245..256
FT /evidence="ECO:0007829|PDB:3WI5"
FT STRAND 262..271
FT /evidence="ECO:0007829|PDB:3WI5"
FT STRAND 277..279
FT /evidence="ECO:0007829|PDB:3WI4"
FT STRAND 285..310
FT /evidence="ECO:0007829|PDB:3WI5"
FT STRAND 314..316
FT /evidence="ECO:0007829|PDB:3WI5"
FT STRAND 318..331
FT /evidence="ECO:0007829|PDB:3WI5"
SQ SEQUENCE 331 AA; 35682 MW; D6945BC81B04B6AF CRC64;
MKKSLIALTL AALPVAAMAD VTLYGTIKAG VETSRSVFHQ NGQVTEVTTA TGIVDLGSKI
GFKGQEDLGN GLKAIWQVEQ KASIAGTDSG WGNRQSFIGL KGGFGKLRVG RLNSVLKDTG
DINPWDSKSD YLGVNKIAEP EARLISVRYD SPEFAGLSGS VQYALNDNAG RHNSESYHAG
FNYKNGGFFV QYGGAYKRHH QVQEGLNIEK YQIHRLVSGY DNDALYASVA VQQQDAKLTD
ASNSHNSQTE VAATLAYRFG NVTPRVSYAH GFKGLVDDAD IGNEYDQVVV GAEYDFSKRT
SALVSAGWLQ EGKGENKFVA TAGGVGLRHK F